View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15876_low_8 (Length: 345)

Name: NF15876_low_8
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15876_low_8
NF15876_low_8
[»] chr7 (32 HSPs)
chr7 (1-331)||(7472519-7472848)
chr7 (1-58)||(7349812-7349869)
chr7 (1-58)||(31156445-31156502)
chr7 (1-56)||(7352191-7352246)
chr7 (1-58)||(7092713-7092770)
chr7 (1-58)||(20299153-20299210)
chr7 (1-58)||(28487247-28487304)
chr7 (1-57)||(443325-443381)
chr7 (1-57)||(7094960-7095016)
chr7 (1-56)||(3035415-3035470)
chr7 (1-56)||(11756925-11756980)
chr7 (1-56)||(18345237-18345292)
chr7 (1-56)||(37412661-37412716)
chr7 (1-58)||(7470566-7470623)
chr7 (1-58)||(38395984-38396041)
chr7 (1-56)||(3676997-3677052)
chr7 (1-56)||(20625734-20625789)
chr7 (1-56)||(20629625-20629680)
chr7 (1-56)||(20642044-20642099)
chr7 (1-56)||(21989853-21989908)
chr7 (1-56)||(47865328-47865383)
chr7 (1-59)||(1849662-1849720)
chr7 (1-57)||(21470828-21470884)
chr7 (1-56)||(1606171-1606226)
chr7 (1-56)||(28485261-28485316)
chr7 (2-56)||(38393683-38393737)
chr7 (1-46)||(20297108-20297153)
chr7 (1-56)||(42331538-42331593)
chr7 (2-48)||(43254023-43254069)
chr7 (1-48)||(24258166-24258213)
chr7 (1-46)||(10690684-10690729)
chr7 (1-53)||(40281935-40281989)
[»] chr6 (11 HSPs)
chr6 (1-56)||(12196049-12196104)
chr6 (1-56)||(26933103-26933158)
chr6 (1-56)||(5275873-5275928)
chr6 (1-56)||(30035141-30035196)
chr6 (1-56)||(30966923-30966978)
chr6 (1-56)||(2629424-2629479)
chr6 (1-56)||(19705110-19705165)
chr6 (1-54)||(20526548-20526601)
chr6 (1-56)||(18317751-18317806)
chr6 (1-56)||(22858481-22858536)
chr6 (1-54)||(17011781-17011834)
[»] chr4 (17 HSPs)
chr4 (1-56)||(44600373-44600428)
chr4 (1-58)||(5100741-5100798)
chr4 (1-56)||(22135164-22135219)
chr4 (1-56)||(24347959-24348014)
chr4 (1-56)||(56030189-56030244)
chr4 (1-58)||(14787966-14788023)
chr4 (1-58)||(22132932-22132989)
chr4 (1-56)||(38890646-38890701)
chr4 (1-56)||(47211253-47211308)
chr4 (1-57)||(14789516-14789572)
chr4 (1-56)||(17662771-17662826)
chr4 (1-54)||(19322410-19322464)
chr4 (1-56)||(10112626-10112681)
chr4 (1-40)||(5516794-5516833)
chr4 (1-40)||(30136331-30136370)
chr4 (1-46)||(38209214-38209259)
chr4 (219-263)||(5368201-5368245)
[»] scaffold1674 (1 HSPs)
scaffold1674 (1-58)||(40-97)
[»] chr8 (10 HSPs)
chr8 (1-58)||(41384491-41384548)
chr8 (1-57)||(3265697-3265753)
chr8 (1-56)||(3873750-3873805)
chr8 (1-56)||(32339094-32339149)
chr8 (1-56)||(43529871-43529926)
chr8 (1-56)||(15808962-15809017)
chr8 (1-56)||(28283758-28283813)
chr8 (1-55)||(41382420-41382474)
chr8 (1-56)||(608470-608525)
chr8 (1-46)||(13986329-13986374)
[»] chr5 (19 HSPs)
chr5 (1-58)||(27912217-27912274)
chr5 (1-56)||(15551925-15551980)
chr5 (2-57)||(18466410-18466465)
chr5 (1-56)||(25803707-25803762)
chr5 (1-56)||(26097421-26097476)
chr5 (1-58)||(18468696-18468753)
chr5 (1-58)||(18509852-18509909)
chr5 (1-58)||(26098786-26098843)
chr5 (1-58)||(27910133-27910190)
chr5 (1-61)||(18596321-18596381)
chr5 (1-56)||(3373575-3373630)
chr5 (2-56)||(15143220-15143274)
chr5 (1-54)||(18511747-18511800)
chr5 (4-56)||(21288529-21288581)
chr5 (1-56)||(6661978-6662033)
chr5 (1-60)||(17415845-17415906)
chr5 (1-57)||(40221281-40221337)
chr5 (1-35)||(10586550-10586584)
chr5 (219-263)||(20451924-20451968)
[»] chr3 (18 HSPs)
chr3 (1-57)||(746421-746477)
chr3 (1-57)||(10622072-10622128)
chr3 (1-56)||(1313082-1313137)
chr3 (1-56)||(25533107-25533162)
chr3 (1-56)||(41848804-41848859)
chr3 (1-58)||(457948-458005)
chr3 (1-54)||(42989954-42990007)
chr3 (1-58)||(42991951-42992008)
chr3 (1-58)||(53916027-53916084)
chr3 (1-56)||(455573-455628)
chr3 (1-56)||(51943042-51943097)
chr3 (1-56)||(53918195-53918250)
chr3 (1-57)||(6561612-6561668)
chr3 (1-56)||(4104428-4104483)
chr3 (1-56)||(27636157-27636212)
chr3 (16-56)||(27000083-27000123)
chr3 (1-46)||(53974152-53974197)
chr3 (6-46)||(11066255-11066295)
[»] chr1 (24 HSPs)
chr1 (1-57)||(9463785-9463841)
chr1 (1-57)||(47905955-47906011)
chr1 (1-56)||(4131827-4131882)
chr1 (1-56)||(9459958-9460013)
chr1 (1-56)||(17325172-17325227)
chr1 (1-56)||(24325347-24325402)
chr1 (1-56)||(39931762-39931817)
chr1 (1-56)||(46432581-46432636)
chr1 (1-56)||(48664852-48664907)
chr1 (1-58)||(31736060-31736117)
chr1 (1-56)||(28998789-28998844)
chr1 (1-56)||(29004505-29004560)
chr1 (1-57)||(6115662-6115719)
chr1 (1-58)||(6997212-6997269)
chr1 (2-58)||(27337478-27337534)
chr1 (1-56)||(15295384-15295439)
chr1 (1-56)||(27339675-27339730)
chr1 (1-56)||(45693969-45694024)
chr1 (1-56)||(2949760-2949815)
chr1 (3-46)||(13785792-13785835)
chr1 (1-56)||(16561131-16561186)
chr1 (1-46)||(32260746-32260791)
chr1 (17-56)||(6997388-6997427)
chr1 (1-29)||(21948728-21948756)
[»] chr2 (11 HSPs)
chr2 (1-56)||(23452774-23452829)
chr2 (1-56)||(42924039-42924094)
chr2 (1-58)||(35216129-35216186)
chr2 (1-56)||(35218510-35218565)
chr2 (1-57)||(27583852-27583908)
chr2 (1-56)||(27136450-27136505)
chr2 (1-56)||(42452449-42452504)
chr2 (1-49)||(34575648-34575696)
chr2 (1-46)||(28568346-28568391)
chr2 (1-46)||(15693583-15693628)
chr2 (1-46)||(28568695-28568740)
[»] scaffold0468 (1 HSPs)
scaffold0468 (1-55)||(2130-2184)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-58)||(51707-51764)
scaffold0005 (1-57)||(50158-50214)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-56)||(12006-12061)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-56)||(78883-78938)
[»] scaffold0133 (1 HSPs)
scaffold0133 (1-58)||(4544-4601)
[»] scaffold0511 (1 HSPs)
scaffold0511 (1-56)||(1735-1790)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 7472519 - 7472848
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacattattgaaaatttctccaattttttcagatttcaaagcaacaat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7472519 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacattattgaaaatttctccaatttt-tcagatttcaaagcaacaat 7472617  T
Q  101 ttcacagattaatgtggcatctgcttgtaagttaaagttcatctatcaatatagcggttatatttatcttgtattcgacacatcttgatagaatctgatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7472618 ttcacagattaatgtggcatctgcttgtaagttaaagttcatctatcaatatagcggttatatttatcttgtattcgacacatcttgatagaatctgatc 7472717  T
Q  201 aattttctcataattaacttaaagttattgaagtgtgactagtttctaataaatgaaattattacggtcataaatcttcggctgcatacatggggacttg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7472718 aattttctcataattaacttaaagttattgaagtgtgactagtttctaataaatgaaattattatggtcataaatcttcggctgcatacatggggacttg 7472817  T
Q  301 tcttacgtaggccgttgaggaatgtgaaata 331  Q
    |||||||||||||||||||||||||||||||    
T  7472818 tcttacgtaggccgttgaggaatgtgaaata 7472848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7349812 - 7349869
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7349812 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 7349869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31156445 - 31156502
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31156445 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 31156502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7352191 - 7352246
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352191 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 7352246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7092713 - 7092770
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7092713 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacatt 7092770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 20299210 - 20299153
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20299210 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacatt 20299153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28487304 - 28487247
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28487304 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacatt 28487247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 443381 - 443325
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  443381 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 443325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7094960 - 7095016
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7094960 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 7095016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3035470 - 3035415
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3035470 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 3035415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 11756980 - 11756925
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11756980 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 11756925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18345292 - 18345237
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18345292 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 18345237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37412661 - 37412716
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37412661 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 37412716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7470566 - 7470623
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7470566 ttatatttttagcaataatattctccatccatcaaattttgagtcatactacaacatt 7470623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38396041 - 38395984
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  38396041 ttatatttttagcaacaatattctccatccatcaaatttggagtcatactacaacatt 38395984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3677052 - 3676997
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  3677052 ttatatttttagcaacaatattctccatctatcaaattttgagtcatactacaaca 3676997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20625789 - 20625734
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  20625789 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactagaaca 20625734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20629680 - 20629625
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  20629680 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactagaaca 20629625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20642099 - 20642044
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  20642099 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactagaaca 20642044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21989908 - 21989853
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  21989908 ttatatttttagcaacaatattctccatccatcaaattttgggtcatactacaaca 21989853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47865383 - 47865328
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  47865383 ttatatttttagcaacaatattctccatccatcaaatttggagtcatactacaaca 47865328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1849720 - 1849662
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatta 59  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||    
T  1849720 ttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaacatta 1849662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21470828 - 21470884
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  21470828 ttatatttttagcaacaatattctccatccatcaaatttggagtcaaactacaacat 21470884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1606226 - 1606171
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  1606226 ttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaca 1606171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28485316 - 28485261
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||    
T  28485316 ttatatttttagcaacaatattcttcatccatcaaattttgaatcatactacaaca 28485261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 38393737 - 38393683
Alignment:
Q  2 tatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||||||    
T  38393737 tatatttttagcaacaatattctccatccatcaaatttagaatcatactacaaca 38393683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 20297153 - 20297108
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  20297153 ttatatttttagcaacaatattctccatccatcaaattttgagtca 20297108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42331538 - 42331593
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||    
T  42331538 ttatatttttagcaacaatattcttcattcatcaaattttaagtcatactacaaca 42331593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 43254023 - 43254069
Alignment:
Q  2 tatatttttagcaacaatattctccatccatcaatttttgagtcata 48  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  43254023 tatatttttagcaacaatattctccatccatcaaattttgagacata 43254069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24258213 - 24258166
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcata 48  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||    
T  24258213 ttatatttttagcaacaatattcttcttccatcaaattttgagtcata 24258166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10690729 - 10690684
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||    
T  10690729 ttatatttttagcaacaatcttctccctccatcaaattttgagtca 10690684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40281935 - 40281989
Alignment:
Q  1 ttatatttttagcaacaa--tattctccatccatcaatttttgagtcatactaca 53  Q
    ||||||||||||||||||  | |||| |||||||||| |||||||||||||||||    
T  40281935 ttatatttttagcaacaaattcttcttcatccatcaaattttgagtcatactaca 40281989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12196049 - 12196104
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12196049 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 12196104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26933103 - 26933158
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26933103 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 26933158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5275873 - 5275928
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5275873 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 5275928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30035141 - 30035196
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30035141 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 30035196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30966978 - 30966923
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  30966978 ttatatttttagcaacaatattctccatccatcaaatttggagtcatactacaaca 30966923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2629424 - 2629479
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  2629424 ttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaca 2629479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19705110 - 19705165
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  19705110 ttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaca 19705165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 20526601 - 20526548
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 54  Q
    |||||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  20526601 ttatatttttagcaacaatattcttcacccatcaaattttgagtcatactacaa 20526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 18317806 - 18317751
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||    
T  18317806 ttatatttttagcaacaatattcttcttccttcaaattttgagtcatactacaaca 18317751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22858481 - 22858536
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||||||||||||    
T  22858481 ttatatttttattaacaatattcttcatccatcaaattttgagtcatactacaaca 22858536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 17011834 - 17011781
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 54  Q
    ||||||||||||||| |||||||| |||||||||| |||| |||||||||||||    
T  17011834 ttatatttttagcaataatattcttcatccatcaaattttaagtcatactacaa 17011781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44600373 - 44600428
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44600373 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 44600428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5100798 - 5100741
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5100798 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacatt 5100741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22135164 - 22135219
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22135164 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 22135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24348014 - 24347959
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24348014 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 24347959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 56030244 - 56030189
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  56030244 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 56030189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14787966 - 14788023
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  14787966 ttatatttttagcaacattattctccatccatcaaattttgagtcatactacaacatt 14788023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22132932 - 22132989
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  22132932 ttatatttttagcaacaatattctccatccatcaaattttgaatcatactacaacatt 22132989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38890646 - 38890701
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  38890646 ttatatttttagcaacaatattctccatccatcaaattttgagtcatgctacaaca 38890701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 47211253 - 47211308
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  47211253 ttatatttttagcaacaatattctccatccatcaaattttaagtcatactacaaca 47211308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14789516 - 14789572
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  14789516 ttatatttttagcaacattattcttcatccatcaaattttgagtcatactacaacat 14789572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17662771 - 17662826
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||    
T  17662771 ttatatttttagcaacaatattctccatccatcaaatttgtagtcatactacaaca 17662826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19322464 - 19322410
Alignment:
Q  1 ttatatttttagcaacaa-tattctccatccatcaatttttgagtcatactacaa 54  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||    
T  19322464 ttatatttttagcaaaaaatattctccatccatcaaattttgagtcatactacaa 19322410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10112681 - 10112626
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| ||| || ||| |||| |||||||||||||||    
T  10112681 ttatatttttagcaacaatattcttcattcaacaaattttaagtcatactacaaca 10112626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5516794 - 5516833
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaattttt 40  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  5516794 ttatatttttagcaacaatattctccattcatcaaatttt 5516833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30136370 - 30136331
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaattttt 40  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  30136370 ttatatttttagcaacaatattctccattcatcaaatttt 30136331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38209214 - 38209259
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||| |||||||||| | |||||||||| ||||||||||    
T  38209214 ttatatttttaacaacaatatttttcatccatcaaattttgagtca 38209259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 5368245 - 5368201
Alignment:
Q  219 ttaaagttattgaagtgtgactagtttctaataaatgaaattatt 263  Q
    |||| ||||||||||||||  ||| ||||||||||||||||||||    
T  5368245 ttaaggttattgaagtgtggttagcttctaataaatgaaattatt 5368201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40 - 97
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacatt 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41384548 - 41384491
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41384548 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacatt 41384491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3265697 - 3265753
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3265697 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 3265753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3873805 - 3873750
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3873805 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 3873750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32339149 - 32339094
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32339149 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 32339094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43529926 - 43529871
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43529926 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 43529871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15809017 - 15808962
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  15809017 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactaaaaca 15808962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28283758 - 28283813
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  28283758 ttatatttttagcaaaaatattctccatccatcaaattttgagtcatactacaaca 28283813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41382474 - 41382420
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaac 55  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  41382474 ttatatttttaacaacaatattctccatccatcaaattttgagtcatactacaac 41382420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 608525 - 608470
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | |||||||| |||||||| |||||||||||    
T  608525 ttatatttttagcaacaatattcttcttccatcaaattttgagtgatactacaaca 608470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13986329 - 13986374
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||||||||||| |||| ||||||| || ||||||||||    
T  13986329 ttatatttttagcaacaatcttcttcatccataaaattttgagtca 13986374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27912274 - 27912217
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27912274 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacatt 27912217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15551980 - 15551925
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15551980 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 15551925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 18466465 - 18466410
Alignment:
Q  2 tatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18466465 tatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 18466410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25803762 - 25803707
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25803762 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 25803707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26097476 - 26097421
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26097476 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 26097421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18468753 - 18468696
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  18468753 ttatatttttagcaaaaatattctccatccatcaaattttgagtcatactacaacatt 18468696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 18509852 - 18509909
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  18509852 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaccatt 18509909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 26098786 - 26098843
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  26098786 ttatatttttagcaataatattctccatccatcaaattttgagtcatactacaacatt 26098843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27910190 - 27910133
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  27910190 ttatatttttagcaataatattctccatccatcaaattttgagtcatactacaacatt 27910133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18596381 - 18596321
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacattatt 61  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||    
T  18596381 ttatatttttagcaacaatattctccatccatcaaattttgagtcatagtacaacaatatt 18596321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3373575 - 3373630
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  3373575 ttatatttttagcaacaatattctccatccatcaaattctgagtcatactacaaca 3373630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 15143274 - 15143220
Alignment:
Q  2 tatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  15143274 tatatttttagcaacaatattctccatccatcaaattttgagtcatactataaca 15143220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18511747 - 18511800
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 54  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  18511747 ttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaa 18511800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 21288581 - 21288529
Alignment:
Q  4 tatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  21288581 tatttttagcaacaatattctccatccatcaaattttgagttatactacaaca 21288529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6661978 - 6662033
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  6661978 ttatatttttagcaacaatattcttcatccatcaagttttaagtcatactacaaca 6662033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17415845 - 17415906
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcat--actacaacattat 60  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||  |||||||||||||    
T  17415845 ttatatttttagcaacaatattcttcatccatcaaattttgagtcatacactacaacattat 17415906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40221337 - 40221281
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    |||||||||||||||||||||||| |||| || || |||||||||||||||||||||    
T  40221337 ttatatttttagcaacaatattcttcatcaattaaattttgagtcatactacaacat 40221281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10586584 - 10586550
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaa 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  10586584 ttatatttttagcaacaatattccccatccatcaa 10586550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 20451968 - 20451924
Alignment:
Q  219 ttaaagttattgaagtgtgactagtttctaataaatgaaattatt 263  Q
    |||| ||||||||||||||  ||| ||||||||||||||||||||    
T  20451968 ttaaggttattgaagtgtggttagcttctaataaatgaaattatt 20451924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 746477 - 746421
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  746477 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 746421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10622072 - 10622128
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10622072 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 10622128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1313137 - 1313082
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1313137 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 1313082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 25533162 - 25533107
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25533162 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 25533107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41848859 - 41848804
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41848859 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 41848804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 458005 - 457948
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  458005 ttatatttttagcaacaatattccccatccatcaaattttgagtcatactacaacatt 457948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42990007 - 42989954
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaa 54  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42990007 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaa 42989954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42992008 - 42991951
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  42992008 ttatatttttaacaacaatattctccatccatcaaattttgagtcatactacaacatt 42991951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 53916027 - 53916084
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  53916027 ttatatttttagcaacaatattctccatccctcaaattttgagtcatactacaacatt 53916084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 455628 - 455573
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  455628 ttatatttttagcaacaatattccccatccatcaaattttgagtcatactacaaca 455573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51943097 - 51943042
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  51943097 ttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaaca 51943042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 53918195 - 53918250
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  53918195 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactataaca 53918250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6561668 - 6561612
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  6561668 ttatatttttagcaacaatattcttcatccatcaaatttcgagtcatactacaacat 6561612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4104428 - 4104483
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  4104428 ttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaca 4104483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27636157 - 27636212
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  27636157 ttatatttttagcaacaatattctccatccatcaaattttaaatcatactacaaca 27636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 27000123 - 27000083
Alignment:
Q  16 caatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||| |||| |||||||||||||||    
T  27000123 caatattctccatccatcaaattttcagtcatactacaaca 27000083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 53974152 - 53974197
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||| |||||| ||||| |||||||||| ||||||||||    
T  53974152 ttatatttttaacaacaacattcttcatccatcaaattttgagtca 53974197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 11066295 - 11066255
Alignment:
Q  6 tttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||||||||||| |||||||||| || |||||||    
T  11066295 tttttagcaacaatattcttcatccatcaaattatgagtca 11066255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9463785 - 9463841
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9463785 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 9463841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 47906011 - 47905955
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47906011 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaacat 47905955  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4131827 - 4131882
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4131827 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 4131882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9459958 - 9460013
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9459958 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 9460013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 17325172 - 17325227
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17325172 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 17325227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24325402 - 24325347
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24325402 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 24325347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39931817 - 39931762
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39931817 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 39931762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46432581 - 46432636
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46432581 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 46432636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48664907 - 48664852
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48664907 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 48664852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31736060 - 31736117
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  31736060 ttatatttttagcaacaatattctccttccatcaaattttgagtcatactacaacatt 31736117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28998789 - 28998844
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28998789 ttatagttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 28998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29004505 - 29004560
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29004505 ttatagttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 29004560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6115662 - 6115719
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatc-aatttttgagtcatactacaacat 57  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  6115662 ttatatttttagcaacaatattctccatccatcaaatttttgagtcatcctacaacat 6115719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6997269 - 6997212
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  6997269 ttatatttttagcaataatattctccatccatcaaattttgagtcatactataacatt 6997212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 27337478 - 27337534
Alignment:
Q  2 tatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  27337478 tatatttttagcaacaatattccccatccatcaaatttggagtcatactacaacatt 27337534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15295384 - 15295439
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  15295384 ttatatttttagcaacaatattcttcttccatcaaattttgagtcatactacaaca 15295439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27339675 - 27339730
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  27339675 ttatatttttagcaacaatattctccatccgtcaaatttggagtcatactacaaca 27339730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 45693969 - 45694024
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  45693969 ttatatttttagcaacaatattctccatccatcaaattttgaatcatagtacaaca 45694024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2949760 - 2949815
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||    
T  2949760 ttatatttttagcaacaatattcttcatccatgaaattttgagtcatactataaca 2949815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 13785792 - 13785835
Alignment:
Q  3 atatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  13785792 atatttttagcgacaatattctccatccatcaatttttgagtca 13785835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16561186 - 16561131
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| |||||| ||| |||||| |||||| ||||||    
T  16561186 ttatatttttagcaacaatattcttcatccaacaaattttgaatcatacaacaaca 16561131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32260791 - 32260746
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||||||||||| |||| |||||||||| ||||||||||    
T  32260791 ttatatttttagcaacaatcttcttcatccatcaaattttgagtca 32260746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 6997388 - 6997427
Alignment:
Q  17 aatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  6997388 aatattctccatccatcatattttgagtcatactacaaca 6997427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21948728 - 21948756
Alignment:
Q  1 ttatatttttagcaacaatattctccatc 29  Q
    |||||||||||||||||||||||||||||    
T  21948728 ttatatttttagcaacaatattctccatc 21948756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23452774 - 23452829
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23452774 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 23452829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 42924039 - 42924094
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42924039 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaaca 42924094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35216129 - 35216186
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  35216129 ttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaacatt 35216186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35218510 - 35218565
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  35218510 ttatatttttagcaacaatattcttcatccatcaaattttgagtcatactacaaca 35218565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27583852 - 27583908
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||    
T  27583852 ttatatttttagcaacaatattcttcatccatcaaaatttgagtcatactacaacat 27583908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 27136450 - 27136505
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  27136450 ttatatttttagcaccaatattcttcatccatcaaattttgagtcatactacaaca 27136505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42452504 - 42452449
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  42452504 ttatatttttagcaacaatattcttcatccatcaaattttaagtcatactacaaca 42452449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34575648 - 34575696
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatac 49  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  34575648 ttatatttttagcaacaatattcttcatccatcaaattttgagtcatac 34575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28568391 - 28568346
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  28568391 ttatatttttaacaacaatattcttcatccatcaaattttgagtca 28568346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15693628 - 15693583
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    |||||||||||||||||||||| | |||||||||| |||| |||||    
T  15693628 ttatatttttagcaacaatattattcatccatcaaattttaagtca 15693583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28568695 - 28568740
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtca 46  Q
    ||||| |||||||||||||||||| |||| ||||| ||||||||||    
T  28568695 ttatagttttagcaacaatattcttcatctatcaaattttgagtca 28568740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2130 - 2184
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaac 55  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2130 ttatatttttagcaacaatattctccatccatcaaattttgagtcatactacaac 2184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 51764 - 51707
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  51764 ttatatttttagcaacattattctccatccatcaaattttgagtcatactacaacatt 51707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50214 - 50158
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacat 57  Q
    ||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  50214 ttatatttttagcaacattattcttcatccatcaaattttgagtcatactacaacat 50158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12006 - 12061
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  12006 ttatatttttagcaacaatattctccatccatcaaattttgaatcatactacaaca 12061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 78938 - 78883
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  78938 ttatatttttagcaacaatattctccatccatcaaattttaagtcatactacaaca 78883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4601 - 4544
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaacatt 58  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||    
T  4601 ttatatttttagcaacaatattcttcatccatcaaattttgagttatactgcaacatt 4544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1790 - 1735
Alignment:
Q  1 ttatatttttagcaacaatattctccatccatcaatttttgagtcatactacaaca 56  Q
    |||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||    
T  1790 ttatatttttagcaacaatattcttcttccttcaaattttgagtcatactacaaca 1735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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