View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15876_low_9 (Length: 334)
Name: NF15876_low_9
Description: NF15876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15876_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 82 - 311
Target Start/End: Complemental strand, 30697106 - 30696873
Alignment:
| Q |
82 |
atgtgtcatccctagctaggatttcatattctctctatcataatgttcacttcaataatcttcaa---atagataatagtttcacaaagtaaacggatgc |
178 |
Q |
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| T |
30697106 |
atgtatcatccttagctaggatttcacattctttccatcataacgttcacttcaatagtctcccttcgatagaaaatggtttcataaagtaaacagatgc |
30697007 |
T |
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| Q |
179 |
tagtttgcctaactttatattttt-ctttgattcacactgataaaatatctaatactacgaataacaagaaagaaaagatgatttctattggaatccatt |
277 |
Q |
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| T |
30697006 |
tagtttgcctaactttatattttttctttgattcacactgataaaatatctaatactactaatcaaaagaaagaaaagatgatttctactggaatccatt |
30696907 |
T |
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| Q |
278 |
aattcttcatgttatctgttacaccttcacatac |
311 |
Q |
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| T |
30696906 |
aattcttcatgttatctgttacaccttcacatac |
30696873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 173 - 311
Target Start/End: Complemental strand, 30688024 - 30687886
Alignment:
| Q |
173 |
ggatgctagtttgcctaactttatatttttctttgattcacactgataaaatatctaatactacgaataacaagaaagaaaagatgatttctattggaat |
272 |
Q |
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| T |
30688024 |
ggatgctagtttgcctaactttatatttttctttgattcacacagataaaatatctaatactacgaataacaagaaagaatagatgatttctattggaat |
30687925 |
T |
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| Q |
273 |
ccattaattcttcatgttatctgttacaccttcacatac |
311 |
Q |
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| T |
30687924 |
ccattaattcttcatgttatctgttacaccttcacatac |
30687886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 30688107 - 30688021
Alignment:
| Q |
17 |
acaagtgtgtgccatttttagaaacaatgaaaattgaaaagaatacaatttcattatttccttaaatgtgtcatccctagctaggat |
103 |
Q |
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| T |
30688107 |
acaagtgtgtgccatttttagaaacaatgaaaattgaaaagaatacaatttcattatttccttaaatgtgtcatccctagctaggat |
30688021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 30697464 - 30697396
Alignment:
| Q |
17 |
acaagtgtgtgccatttttagaaacaatgaaaattgaaaagaatacaatttcattatttccttaaatgt |
85 |
Q |
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| T |
30697464 |
acaattgtgtgccatttttagaaacaatgaaaattgaaaagaatacaatttcattatttccttaaatgt |
30697396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 12574007 - 12574079
Alignment:
| Q |
65 |
tttcattatttccttaaatgtgtcatccctagctaggatttcatattctctctatcataat-gttcacttcaa |
136 |
Q |
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| T |
12574007 |
tttcattatttccataaatgcatcatccatagctagcatttcatcttctctccatcacaatggttcacttcaa |
12574079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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