View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15877_high_7 (Length: 297)

Name: NF15877_high_7
Description: NF15877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15877_high_7
NF15877_high_7
[»] chr1 (16 HSPs)
chr1 (11-281)||(48179339-48179609)
chr1 (68-276)||(47873854-47874062)
chr1 (69-229)||(40140972-40141136)
chr1 (89-223)||(2417749-2417886)
chr1 (76-225)||(40027189-40027337)
chr1 (68-225)||(49287413-49287567)
chr1 (79-283)||(33860546-33860750)
chr1 (79-283)||(33920173-33920377)
chr1 (88-223)||(37847219-37847359)
chr1 (79-279)||(45196748-45196954)
chr1 (70-286)||(49440278-49440494)
chr1 (63-145)||(41186128-41186210)
chr1 (154-279)||(49540497-49540622)
chr1 (96-169)||(49540418-49540491)
chr1 (247-280)||(40027131-40027164)
chr1 (159-223)||(37850074-37850138)
[»] chr3 (3 HSPs)
chr3 (77-280)||(14964282-14964485)
chr3 (78-144)||(540434-540500)
chr3 (76-144)||(485609-485677)
[»] chr7 (1 HSPs)
chr7 (88-229)||(32347364-32347505)
[»] chr5 (2 HSPs)
chr5 (86-229)||(31266823-31266969)
chr5 (104-145)||(1204363-1204404)
[»] chr6 (3 HSPs)
chr6 (81-144)||(34606051-34606114)
chr6 (81-144)||(34727328-34727391)
chr6 (81-144)||(33465645-33465708)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 48179609 - 48179339
Alignment:
Q  11 cacagagaccacaagttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179609 cacagagaccacaggttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat 48179510  T
Q  111 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179509 ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc 48179410  T
Q  211 tcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccaca 281  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48179409 tcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccaca 48179339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 68 - 276
Target Start/End: Complemental strand, 47874062 - 47873854
Alignment:
Q  68 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 167  Q
    ||||||| ||||||||| ||||||||||||||| ||||| |||| || |||||| || |||| |||||||| |||||  ||||  |||||  || |||||    
T  47874062 taacacgatgtacaatatgcaagttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat 47873963  T
Q  168 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttct 267  Q
    || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||  | |||| ||  || |||| ||||||||||||| ||    
T  47873962 gaggagctggaagcgtaatgcatttttacaattttttatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgct 47873863  T
Q  268 ctcatatcc 276  Q
    |||||||||    
T  47873862 ctcatatcc 47873854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 40141136 - 40140972
Alignment:
Q  69 aacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat- 167  Q
    |||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||     
T  40141136 aacacggtgtacaacatgcaagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccata 40141037  T
Q  168 --gaagagctggaagcgtaatgcatttttgcaa-ttttttatcatctcctgaatacacactgcat 229  Q
      || ||||||||| ||| || |||||||| || |||||||||||| ||||||||||||||||||    
T  40141036 aggaggagctggaaacgtgatacatttttgtaatttttttatcatcgcctgaatacacactgcat 40140972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 2417749 - 2417886
Alignment:
Q  89 agttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaa 185  Q
    ||||||||||||  |||||||||||| ||||||||| |||| ||||||||||||||  ||||||| |||  ||||||||   || ||||||||||||||     
T  2417749 agttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtac 2417848  T
Q  186 tgcatttttgcaattttttatcatctcctgaatacaca 223  Q
    | ||||||||||||||||||||||| ||||||||||||    
T  2417849 tacatttttgcaattttttatcatcccctgaatacaca 2417886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 40027337 - 40027189
Alignment:
Q  76 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagct 175  Q
    ||||||||| |||||||||||||| |||||||||||||| ||| || || || | |||||||| |||||  |||||   |||  |||||||||| |||||    
T  40027337 tgtacaatatgcaagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagct 40027239  T
Q  176 ggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 225  Q
    ||||||||||| |||||||| ||||||||| |||| ||||||||||||||    
T  40027238 ggaagcgtaatacatttttgtaattttttaccatcccctgaatacacact 40027189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 49287567 - 49287413
Alignment:
Q  68 taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat 167  Q
    ||||||| |||| ||||  ||||| |||||||||| ||||||||||| ||||||||| |||| ||||| ||||||||  |||||| ||||  || | |||    
T  49287567 taacacggtgtataatatccaagtcactcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat 49287468  T
Q  168 gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact 225  Q
       ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||    
T  49287467 ---gagctggaagcataatgcattttttcaattttttatcatccccgaaatacacact 49287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 283
Target Start/End: Complemental strand, 33860750 - 33860546
Alignment:
Q  79 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 178  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33860750 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33860651  T
Q  179 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 278  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33860650 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33860551  T
Q  279 acagg 283  Q
    |||||    
T  33860550 acagg 33860546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 283
Target Start/End: Original strand, 33920173 - 33920377
Alignment:
Q  79 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga 178  Q
    |||||| ||| | |||||||||||||||||||||| |||||   || ||   |||| |||||||||  ||||| | ||||||||||||| || || || |    
T  33920173 acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa 33920272  T
Q  179 agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc 278  Q
    | |||||| ||||||||||| ||||||||||||| |||||||||||| |||   | | | ||   |  ||||| |||||||||||| |||||||||||||    
T  33920273 accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc 33920372  T
Q  279 acagg 283  Q
    |||||    
T  33920373 acagg 33920377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 37847359 - 37847219
Alignment:
Q  88 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 187  Q
    |||||||||||||||| ||||||||||||||||| ||  ||| ||||| ||||||||  || ||||| | ||||||||||| | | || |||||||||||    
T  37847359 aagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatg 37847260  T
Q  188 cattttt-----gcaattttttatcatctcctgaatacaca 223  Q
    |||||||      |||||| |||||||||||||||||||||    
T  37847259 catttttttttctcaatttgttatcatctcctgaatacaca 37847219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 79 - 279
Target Start/End: Complemental strand, 45196954 - 45196748
Alignment:
Q  79 acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg-- 176  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||||| ||||||||||||||| ||||     |  ||||| ||| | ||||||      
T  45196954 acaatatgcaagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatcaaacacattgttgcatcaggagctgga 45196855  T
Q  177 ----gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcat 272  Q
        |||| ||||||| ||||||||||||||||||||  ||||||||| |||| ||||  | |||||||| |  |||| |||||| ||| || | |||||    
T  45196854 actagaagtgtaatgcttttttgcaattttttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcat 45196755  T
Q  273 atcccca 279  Q
    |||||||    
T  45196754 atcccca 45196748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 286
Target Start/End: Original strand, 49440278 - 49440494
Alignment:
Q  70 acacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 169  Q
    |||| |||| ||||| |||||||||| ||| ||||||||||||||||||| | || |||| ||||||||||||||| |||||  | | | |||  |||||    
T  49440278 acacattgtgcaatatgcaagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacatggagaagcctgtatcatga 49440377  T
Q  170 agagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctct 269  Q
     ||  ||||||||| ||| | |||||  |||||||||| || | ||||||||   | |||   | |||||||| || ||||||||| ||||| || ||||    
T  49440378 ggatttggaagcgtgatgtacttttgtgattttttatcgtcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactct 49440477  T
Q  270 catatccccacaggttc 286  Q
    |||||||||||| ||||    
T  49440478 catatccccacatgttc 49440494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 41186210 - 41186128
Alignment:
Q  63 aaaaataacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcg 145  Q
    |||| ||||||  ||||||||| |||||||||||||||||| |||||||||  ||||||||| |||||||||| |||||||||    
T  41186210 aaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatcg 41186128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 279
Target Start/End: Original strand, 49540497 - 49540622
Alignment:
Q  154 ggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgaca 253  Q
    |||||||||| ||||| |||||||||   ||||| ||||||| || ||||||||||| |||||||||||||| ||||  | ||||  || || |||||||    
T  49540497 ggaacttgtttcatgaggagctggaattttaatgtatttttgaaactttttatcatcacctgaatacacactacatattgtagatccaagacggatgaca 49540596  T
Q  254 tacacagagtttctctcatatcccca 279  Q
    |||| |||||| ||||| ||||||||    
T  49540597 tacatagagttgctctcgtatcccca 49540622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 49540418 - 49540491
Alignment:
Q  96 caactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga 169  Q
    ||||||||||||||||||| |||||| || |||  |||||||| |||||  |||||  ||||||||||||||||    
T  49540418 caactagagaataatctacctcatatcgtagatttctaaaacaacaatccaacatgaaggaacttgttccatga 49540491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 40027164 - 40027131
Alignment:
Q  247 gatgacatacacagagtttctctcatatccccac 280  Q
    |||||||||||||||||| |||||||||||||||    
T  40027164 gatgacatacacagagttactctcatatccccac 40027131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 37850138 - 37850074
Alignment:
Q  159 ttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacaca 223  Q
    |||||||||| | || ||||| |||||||||||||| |||||| |||||||  ||||||| ||||    
T  37850138 ttgttccatggaaagttggaaacgtaatgcatttttacaatttgttatcattccctgaatgcaca 37850074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 77 - 280
Target Start/End: Complemental strand, 14964485 - 14964282
Alignment:
Q  77 gtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg 176  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||   |||   | | |||||| |||   ||||||    
T  14964485 gtacaatatgcaaattactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctg 14964386  T
Q  177 gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcc 276  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||| ||||  | |||||||| || |||||||||||||||||| || ||||||||    
T  14964385 gaagcgtaatgcatttttgcaattgtttatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatcc 14964286  T
Q  277 ccac 280  Q
    ||||    
T  14964285 ccac 14964282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 540434 - 540500
Alignment:
Q  78 tacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 144  Q
    |||||||| || |||||||| ||||||||||||| || ||||||||||||||  |||| ||||||||    
T  540434 tacaataaccatgttactcatctagagaataatccacctcatattgttgatgtttaaagcaccaatc 540500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 485609 - 485677
Alignment:
Q  76 tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 144  Q
    |||||||||| || |||||||| || ||||| |||| || |||||||||||||| ||||| ||||||||    
T  485609 tgtacaataaccatgttactcatctggagaaaaatccacctcatattgttgatgtctaaagcaccaatc 485677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 32347364 - 32347505
Alignment:
Q  88 aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg 187  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || || |||| ||| |||||| | ||||||||||| |||||    
T  32347364 aagttattcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatg 32347463  T
Q  188 catttttgcaattttttatcatctcctgaatacacactgcat 229  Q
    |||||||||||| |||||||||| |||||||| |||| ||||    
T  32347464 catttttgcaatcttttatcatcccctgaatagacacggcat 32347505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 31266969 - 31266823
Alignment:
Q  86 gcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaa 185  Q
    |||| |||||||||||||||||||||||||||| || || |||  |||||| || | ||| || |   ||||||||||| || | ||| |||||| ||||    
T  31266969 gcaaattactcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaa 31266870  T
Q  186 tgcatttttgcaatt---ttttatcatctcctgaatacacactgcat 229  Q
    |||||||||||||||   |||||||||| |||||||| ||| |||||    
T  31266869 tgcatttttgcaattttattttatcatcccctgaatagacattgcat 31266823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 1204363 - 1204404
Alignment:
Q  104 gaataatctacttcatattgttgatgcctaaaacaccaatcg 145  Q
    ||||||||||| ||||| |||||||| |||||||||||||||    
T  1204363 gaataatctacctcatagtgttgatgtctaaaacaccaatcg 1204404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 34606114 - 34606051
Alignment:
Q  81 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 144  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34606114 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 34727391 - 34727328
Alignment:
Q  81 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 144  Q
    |||||||| | |||||||| |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  34727391 aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc 34727328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 33465645 - 33465708
Alignment:
Q  81 aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc 144  Q
    |||||||| | |||||||  |||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33465645 aataagcatgctactcaaaaagagtataatctacctcatattgtagatgtctaaaacaccaatc 33465708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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