View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15877_low_1 (Length: 526)
Name: NF15877_low_1
Description: NF15877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15877_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 507
Target Start/End: Complemental strand, 28520414 - 28519922
Alignment:
| Q |
15 |
atgaagggttatgtgaactcgcctatttttccaatatttttgctgccataattgtgagcaagaaccggttttacaagatgtccaaacttttctgaacatg |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| |
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| T |
28520414 |
atgaggggttatgtgaactcgcctatttttccaatatttttgctgccataattgtgagcaagaaccgattttacaagatgtccaaacgtgtctgaacatg |
28520315 |
T |
|
| Q |
115 |
gaggataaccaaatgcttatcgctccttttaatgatgtcgagttttctgaagcaattaaacaaccaggctttgttgtaggaagatccattacagataatg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||| |||| |
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| T |
28520314 |
gaggataaccaaatgcttatcgctccttttaatgatgtcgagttttctgaagcggttaaaaaatcaggctttgttgcaggaagatccattacagaaaatg |
28520215 |
T |
|
| Q |
215 |
tctttgtcgccttagaaatcatacattatttgaagtgcaggactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaaccatatgatcg |
314 |
Q |
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| T |
28520214 |
tgtttgtcgccttagaaatcatatattatttgaagtgcaagactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaatcatatgatcg |
28520115 |
T |
|
| Q |
315 |
tgttgattggaattatttgtttagcattttggacaggatgggtttcaactcagtgtggattacatgtgcgttactacaataacttaccatgttctgatca |
414 |
Q |
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|||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |
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| T |
28520114 |
tgttgaatggaattatttttttagaattttggaaaggatgggtttcaactcagtgtggattacatgtgtgttactacagtaagttaccatgttctgatca |
28520015 |
T |
|
| Q |
415 |
atgataacaaagtaggtcctatacatccaaggagaggtataagtcaaggtgacccttttcaccgtatgtgtttattatttgtgatgaaggtat |
507 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28520014 |
atgataacaaagtaggtctaatacatccaaggagaggtataagtcaaggtgacccttttcaccatatgtgtttattatttgtgatgaaggtat |
28519922 |
T |
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