View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15877_low_10 (Length: 251)
Name: NF15877_low_10
Description: NF15877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15877_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 12001339 - 12001103
Alignment:
| Q |
1 |
atacttgagatttagaatataaacctcttctcaaagttgataatcagtccaaatttcaaaagtgtcacaattcaaaccccccatttgaacccccttctcc |
100 |
Q |
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| T |
12001339 |
atacttgagatttagaatataaacctcttctcaaagttgataatcagtccaaatttcaaaagtgtcacaattcaaaccccccatttgaacccccttctcc |
12001240 |
T |
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| Q |
101 |
acttatataagtgagacataataaaccaatatatttgtatatttctccacataggaagaaggggttccagtacccaacaaacctcctgtcataactctat |
200 |
Q |
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| T |
12001239 |
acttatataagtgagacataataaaccaatatatttgtatatttctccacataggaagaaggggttccagtacccaacaaacctcctgtcataactctat |
12001140 |
T |
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| Q |
201 |
ggaggaaatcgtaaaaccggcaatatcactacaagtt |
237 |
Q |
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| T |
12001139 |
ggaggaaatcgtaaaaccggcaatatcactacaagtt |
12001103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 35869474 - 35869417
Alignment:
| Q |
96 |
tctccacttatataagtgagacataataaaccaatatatttgtatatttctccacata |
153 |
Q |
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||||||||||||||||||||||||||| ||| || ||||||| | |||||||||||| |
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| T |
35869474 |
tctccacttatataagtgagacataatgaactaacatatttgagtttttctccacata |
35869417 |
T |
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