View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15877_low_12 (Length: 207)
Name: NF15877_low_12
Description: NF15877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15877_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 6 - 180
Target Start/End: Complemental strand, 11412161 - 11411987
Alignment:
| Q |
6 |
agtgagaagaataaagataaagaagtgattgatattgaagcttcagctgaaagagaagaagctaacaggaaaaagcaggaaaggatacttgatcaagaag |
105 |
Q |
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| T |
11412161 |
agtgataagaataaagataaagaagtgattgatatttaagcttcagctgaaagagaggaagctaacaggaaaaagcaggaaaggctacttgatcaagaag |
11412062 |
T |
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| Q |
106 |
gaagttccagtaaaacaaatgatgtagatttgttgaaggagcaggatatggtactagagcaggaattgaatgaac |
180 |
Q |
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| T |
11412061 |
gaagttccagtaaaacaaatcctgcagatctgttgaaggatcaggatatggtactagagcaggaattgaatgaac |
11411987 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 38524375 - 38524538
Alignment:
| Q |
12 |
aagaataaagataaagaagtgattgatattgaagcttcagctg--aaagagaag----aagctaacaggaaaaagcaggaaaggatacttgatcaagaag |
105 |
Q |
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| T |
38524375 |
aagaataaagataaataagtgattgatcttgaagcttcagatggaaaggaaaaggagaaagctaacaagaatgagcaaggaaagttacttgatcaagaag |
38524474 |
T |
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| Q |
106 |
gaagttccagtaaaacaaatgatgtagatttgttgaaggagcaggatatggtactagagcagga |
169 |
Q |
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| T |
38524475 |
caagctccaataaatcaaatccagcagctctgttgaaggagcaggataagttactagagcagga |
38524538 |
T |
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