View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15877_low_2 (Length: 407)
Name: NF15877_low_2
Description: NF15877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15877_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 25000434 - 25000810
Alignment:
| Q |
12 |
tcatcaacgaagtattggctaaaggtaaaattcatcaaaatttattttggttttcacttttcacactgtattagaatttaaaatcatattcatattgttg |
111 |
Q |
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| T |
25000434 |
tcatcaacgaagtattggctaaaggtaaaattcatcaaaatttattttggttttcacttttcacactgtattagaatttaaaatcatatttatattgttg |
25000533 |
T |
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| Q |
112 |
ttaatgataaataatcattgagaataaataatgcaggtatgcaaccatatgtgacccttttccattgggatgttcctcaagccttagaggatgagtatga |
211 |
Q |
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| T |
25000534 |
ttaatgataaataatcattgagaataaataatgcaggtatgcaaccatatgttacccttttccattgggatgttcctcaagccttagaggatgagtatga |
25000633 |
T |
|
| Q |
212 |
cggttttttaagccgtcgcattgtgtgagtgacaacaatttttcatctagagctatttctgtatgattatttagggaaagattacggtaaatgaaattaa |
311 |
Q |
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| T |
25000634 |
cggttttttaagccgtcgcattgtgtgagtgacaacaattttccatctagagctatttctgtatgattatttagggaaagattacggtaaatgaaattaa |
25000733 |
T |
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| Q |
312 |
ctgattaacttatgtaatttacgatcttgcagagatgattttagggactatgctgaactttgcttcaaggaatttgg |
388 |
Q |
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| T |
25000734 |
ctgattaacttatgtaatttacgatcttgcagagatgattttagggactatgctgaactttgcttcaaggaatttgg |
25000810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 109 - 392
Target Start/End: Complemental strand, 24986628 - 24986349
Alignment:
| Q |
109 |
ttgttaatgataaataatcattgagaataaataatgcaggtatgcaaccatatgtgacccttttccattgggatgttcctcaagccttagaggatgagta |
208 |
Q |
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| T |
24986628 |
ttgtcaatcataaataatcattgagaataa----tgcaggtttgcagccatatgtgacccttttccattgggacgttccccaagccttagaggatgagta |
24986533 |
T |
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| Q |
209 |
tgacggttttttaagccgtcgcattgtgtgagtgacaacaatttttcatctagagctatttctgtatgattatttagggaaagattacggtaaatgaaat |
308 |
Q |
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| T |
24986532 |
tgacggttttttaagcccacggattgtgtgagtgacaccaattttcaatatagagctatttctttatgactatttagggaaagattgcggtaaatctaaa |
24986433 |
T |
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| Q |
309 |
taactgattaacttatgtaatttacgatcttgcagagatgattttagggactatgctgaactttgcttcaaggaatttggtgat |
392 |
Q |
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| T |
24986432 |
taagtgattaacatgtgtaattcgcgagcttgcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgat |
24986349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 108 - 392
Target Start/End: Complemental strand, 25047031 - 25046752
Alignment:
| Q |
108 |
gttgttaatgataaataatcattgagaataaataatgcaggtatgcaaccatatgtgacccttttccattgggatgttcctcaagccttagaggatgagt |
207 |
Q |
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||||||||| |||| |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||| |
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| T |
25047031 |
gttgttaatcataagtaatcattgagaataa----tgcaggtgtgcaaccatatgtgacacttttccattgggacgttccccaagccttagaggatgagt |
25046936 |
T |
|
| Q |
208 |
atgacggttttttaagccgtcgcattgtgtgagtgacaacaatttttcatctagagctatttctgtatgattatttagggaaagattacggtaaatgaaa |
307 |
Q |
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||| ||||||||| || | ||||||||||||||||||| ||||||| |||||||| || ||||| ||| | ||||||||||| | || | |||||| || |
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| T |
25046935 |
atggcggttttttgagtcctcgcattgtgtgagtgacaccaattttccatctagaactgtttctttatcactatttagggaaggtttgcagtaaatctaa |
25046836 |
T |
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| Q |
308 |
ttaactgattaacttatgtaatttacgatcttgcagagatgattttagggactatgctgaactttgcttcaaggaatttggtgat |
392 |
Q |
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| T |
25046835 |
ttaattgattaatatttgaaattcatga-gttgcagaaatgattttaaggactatgctgatctttgcttcaaggaatttggtgat |
25046752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 25160437 - 25160370
Alignment:
| Q |
143 |
tgcaggtatgcaaccatatgtgacccttttccattgggatgttcctcaagccttagaggatgagtatg |
210 |
Q |
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||||||||| ||||||| ||||| ||||||||||||||| |||||||| | ||||| || ||||||| |
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| T |
25160437 |
tgcaggtatacaaccattagtgactcttttccattgggatcttcctcaaactttagaagaagagtatg |
25160370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Complemental strand, 25189422 - 25189380
Alignment:
| Q |
346 |
atgattttagggactatgctgaactttgcttcaaggaatttgg |
388 |
Q |
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|||||||| | ||||||||||| |||||||||||||||||||| |
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| T |
25189422 |
atgattttcgagactatgctgatctttgcttcaaggaatttgg |
25189380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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