View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15877_low_6 (Length: 311)
Name: NF15877_low_6
Description: NF15877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15877_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 12001641 - 12001358
Alignment:
| Q |
11 |
ttattctcatagtgataacaatgtattgattattaagtgtcaaatctacttgatttcacatatatattatattttgagcacttattaacttgttttgtaa |
110 |
Q |
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| T |
12001641 |
ttattctcatagtgataacaatgtattgattattaagtgtcaaatctacttgatttcacatatatattatattttgagcacttattaacttgttttgtaa |
12001542 |
T |
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| Q |
111 |
gtaatcctataaaaatcccccaatttattgtcaatattagttagttaggtttcaagtatggtaatcactactatgacttatttccttgcatttgagaatt |
210 |
Q |
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| T |
12001541 |
gtaatcctataaaaatcccccaatttattgtcaatattagttagttaggtttcaagtatggtaatcactactatgacttatttccttgcatttgagaatt |
12001442 |
T |
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| Q |
211 |
ctcttagagagccctgaaagggtgaggaccgaacaagtcagaaagttttaagcctacttcacaaacaatcattccttctttttc |
294 |
Q |
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| T |
12001441 |
ctcttagagagccctgaaagggtgaggaccgaacaagtcagaaagttttaagcctacttcacaaacaatcattccttctttttc |
12001358 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 8189346 - 8189266
Alignment:
| Q |
89 |
cacttattaacttgttttgtaagtaatcctataaaaatcccccaatttattgtcaatattagttagttaggtttcaagtat |
169 |
Q |
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| T |
8189346 |
cacttattaacttattttacaagtaatctgatggaaatcccctaatttacttttaatattatatagttaggtttcaagtat |
8189266 |
T |
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