View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_high_11 (Length: 378)
Name: NF15878_high_11
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_high_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 10425114 - 10424749
Alignment:
| Q |
15 |
atgaaacctcttatatacacttgacaaactccatcactatttctgttctattctcaagactaccctttgggtgtctataggccaaaaagaaagcaagagt |
114 |
Q |
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| T |
10425114 |
atgaaacctcttatatacacttgacaaactccatccctatttctgttctattctcaagactaccctttgggtgtctataggccaaaaagaaagcaagagt |
10425015 |
T |
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| Q |
115 |
tgatataatctcccttgcaacattgtcttgatctttcctcattttgttgagag--ttagagccaattttgagaacaatgataagaattcattatttccat |
212 |
Q |
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| T |
10425014 |
tgatctaatctcccttgcaacattgtcttgatctttcctcattttgttgagagagttagagccaattttgagaacaatgataagaattcattatttccat |
10424915 |
T |
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| Q |
213 |
atttaaaatgattctatagaatatggtgtggctgatcaatcttatgttggagtgatatctacttcttaggatataatgttatgggcaatccattttgggg |
312 |
Q |
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| T |
10424914 |
atttaaaatgattctatagaatatggtgtggctgatcaatcttatgttgaagtgttatctacttcttaggatataatgttatgggcaatccattttgggg |
10424815 |
T |
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| Q |
313 |
aagagcaaaagggccatattgaatcccattctttgtaccctccacagaccacctgcagataataat |
378 |
Q |
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| T |
10424814 |
aagagcaaaagggccatattgaatcccattctttgtaccctccacagaccacctgtagataataat |
10424749 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 30522063 - 30522127
Alignment:
| Q |
302 |
ccattttggggaagagcaaaagggccatattgaatcccattctttgtaccctccacagaccacct |
366 |
Q |
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| T |
30522063 |
ccattttgaggaagagcaaaaggaccatactgaattccgttcttttcaccgaccacagaccacct |
30522127 |
T |
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