View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_high_12 (Length: 338)
Name: NF15878_high_12
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 19173378 - 19173685
Alignment:
| Q |
18 |
caatagagagactggcaaagctccctaacttcatcagcagaagaactccctaaaggttaaagaagcccagcttgacctccttcccgaagagaggcagact |
117 |
Q |
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| T |
19173378 |
caatagagagactggcaaagctccctaacttcatcagcagaagaactccctaaaggttaaagaagcccagcttgacctccttcccgaagagaggcagact |
19173477 |
T |
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| Q |
118 |
gaatcctatttcggctataacggtctgcattactatgttttcatacgtaggaatacctccgttagccggcttttgtagaaaattctatttgttcttcgcc |
217 |
Q |
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| T |
19173478 |
gaatcctatttcggctataacggtctgtattactatgttctcatacgtaggaatacctccgttagccggcttttgtagtaaattctatttgttcttcgcc |
19173577 |
T |
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| Q |
218 |
actttgtgttgtggggcttacttcctatctccaccatgcgaaactttcaaacgagtgatagtttcaacattaactttcaaaattcctaggcccaccattt |
317 |
Q |
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| T |
19173578 |
ac--tgtgttgtggggcttacttcctatctccactgtgtaaaactttcaaacgagtgatagtttcaacattaactttcaaaattcctaggcccaccattt |
19173675 |
T |
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| Q |
318 |
gattattcat |
327 |
Q |
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| T |
19173676 |
gattattcat |
19173685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 25565083 - 25565003
Alignment:
| Q |
164 |
gtaggaatacctccgttagccggcttttgtagaaaattctatttgttcttcgccactttgtgttgtggggcttacttccta |
244 |
Q |
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| T |
25565083 |
gtaggaatacccccgttagccggcttttatagcaaattctatttgttcttcgccgctttgggttgtggggcttacttccta |
25565003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 46435501 - 46435461
Alignment:
| Q |
183 |
ccggcttttgtagaaaattctatttgttcttcgccactttg |
223 |
Q |
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| T |
46435501 |
ccggcttttgtagcaaattctatttgttctttgccgctttg |
46435461 |
T |
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