View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_high_26 (Length: 236)
Name: NF15878_high_26
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 12605189 - 12604974
Alignment:
| Q |
1 |
tatatatacatgaatagaaataacttaaactaacggccctaaattgtaaaccttcgacaaattaaattcatcaggcttccacgtgttttcgacctttgac |
100 |
Q |
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| T |
12605189 |
tatatatacatgaatagaaataactgaaactaacggccctaaactgtaaaccttcaac-----aaattcatcaagctttcatgtgttttcgacctttgac |
12605095 |
T |
|
| Q |
101 |
cttgcttcttcacaaaatatttgaattctttattgtcgaatcctaaatgaactgaatatgccaagacctcttacaatctgtcaaaagcaatccacttata |
200 |
Q |
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| T |
12605094 |
cttgcttcttcgcaaaatatttgaactctttattgtcgaatcctaaatgaactgaatatgccaagacctcttacaatctgtcaaaagcaatccacttata |
12604995 |
T |
|
| Q |
201 |
ttgacgctaagagtaaaactt |
221 |
Q |
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| T |
12604994 |
ttgacgctaagagtaaaactt |
12604974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 49300100 - 49300037
Alignment:
| Q |
78 |
tccacgtgttttcgacctttgaccttgcttcttcacaaaatatttgaattctttattgtcgaat |
141 |
Q |
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| T |
49300100 |
tccacatgtcttcgacctttgaccttgcttcttcataaaagatatgaagtcttcattgttgaat |
49300037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20693709 - 20693667
Alignment:
| Q |
1 |
tatatatacatgaatagaaataacttaaactaacggccctaaa |
43 |
Q |
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| T |
20693709 |
tatatatacatgagtagaaataactgaaactaacggtcctaaa |
20693667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35749903 - 35749965
Alignment:
| Q |
1 |
tatatatacatgaatagaaataacttaaactaacggccctaaattgtaaaccttcgacaaatt |
63 |
Q |
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||||||||||||||||||||||||| ||| |||||| ||||| | ||| |||||||||||| |
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| T |
35749903 |
tatatatacatgaatagaaataactgaaaataacggttctaaactataagacttcgacaaatt |
35749965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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