View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_high_6 (Length: 499)
Name: NF15878_high_6
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 33 - 489
Target Start/End: Original strand, 37045776 - 37046216
Alignment:
| Q |
33 |
tccagaatttattatgagaggtagacacgtaggtacgaaagtggtacagtgagtctaatgcatgatggcatgcagatt---gtaattaaacagagaccga |
129 |
Q |
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| T |
37045776 |
tccagaatttattatgagaggtagacacgtaggtccgaaagtggtacagtgagtctaatgcatgatggcatgcagattgtagtaattaaacagagaccga |
37045875 |
T |
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| Q |
130 |
ctgccgcattcatcgcacacagtacaacaaatggtggcatatcattggacgatttnnnnnnngctattccaatcttaac--------tttgtagtcgtcc |
221 |
Q |
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| T |
37045876 |
ctgccgcattcatcgcacacagtacaacaaatggtggcatatcattggacgatttaaaaaaagctattccaatcttaactacttcaatttctagtcg--- |
37045972 |
T |
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| Q |
222 |
ttccttccttccattgcatgtccacctcccaaccatttattcatttcattttaaaggtacaaaaataaaattgtgaccacagataaaaaatggggttgat |
321 |
Q |
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| T |
37045973 |
-tccttccttccattgcatgtccacctcccaaccatttattcatttcgttttaaaggtacaaaaataaaatt--------------------gggttgat |
37046051 |
T |
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| Q |
322 |
tcgtttcgtggttcaggttggtt--aaaaataatcaaatgtatctttgttgaccccagtatttggtccgaaaaactcaagttggagagctatcttagggt |
419 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37046052 |
tcg-----tggttcaggttggttaaaaaaataatcaaatgtatctttgttgaccccagtatttggtccgaaaaactcaagttggagagctatcttagggt |
37046146 |
T |
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| Q |
420 |
gcctaccgacaatcatggagtccaattttatattatgatgcttcactaatcccatgtatcgtatcctatg |
489 |
Q |
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| T |
37046147 |
gcctaccgacaatcatggagtccaattttatattatgatggttcactaatcccatgtatcgtatcctatg |
37046216 |
T |
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