View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15878_high_9 (Length: 382)
Name: NF15878_high_9
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 37662216 - 37661869
Alignment:
| Q |
8 |
agagaagaagagattgcaaaactggcatgtttactatcataacaaatatgaaagagactcttcaaagagaccaactactcgggtagctttcttttcatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37662216 |
agagaagaagagattgcaaaactggcatgtttactatcataacaaatatgaaagagactcttcaaagagaccaactactcgggtagctttcttttcatga |
37662117 |
T |
|
| Q |
108 |
tttacaataaaattaacttttcctaatttgagcgaaagagactcccttttatcttttccttcattatgagaatcatatggtgatatcaactgatgccatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37662116 |
tttacaataaaattaacttttcctaatttgagcgaaagagactctcttttatcttttccttcattatgagaatcatatggtgatatcaactgatgccatt |
37662017 |
T |
|
| Q |
208 |
ttatatttcacaatttgatttcttactatgtatatagacaggtatgatgggtctcttggggactaaagttgatgccattgattactatactgcagagatt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37662016 |
ttatatttcacaatttgatttcttactatgtatatagacaggtatgatgggtctcttggggactaaagttgatgccattgattactatactgcagagatt |
37661917 |
T |
|
| Q |
308 |
gagaagttgagccaacaagtaagtattgattgacgggtgcaatattta |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37661916 |
gagaagttgagccaacaagtaagtattgattgacgggtgcaatattta |
37661869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University