View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_low_12 (Length: 381)
Name: NF15878_low_12
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 22618742 - 22618384
Alignment:
| Q |
22 |
tctgtcactagatttgtctggaaacagacttcaaggagatgcactcgtcggtaatttacaatctgcaggatgcaatggatctggtttagaggaacttgac |
121 |
Q |
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| T |
22618742 |
tctgtcactagatttgtctggaaaccgacttcaaggagatgcactcatcggtaatttacaatctgcaagatgaaatggatctggtttagaggaacttgac |
22618643 |
T |
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| Q |
122 |
atgaccaacaacaatttcaatgatcaactgccgacatggttggggcaacttgaaaatatggtaatcctcacacttcaatccagttttttccatggtccta |
221 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
22618642 |
atgaccaacaacaatttcaataatcaactgccgacatggttggggcaacttgaaaatatggtaaacctcacacttcaatcaagttttttccatggtccta |
22618543 |
T |
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| Q |
222 |
ttccaaatattttgggaaaattgtcaaatttgaaatatttaacccttggtaacaattacttgaatggaactattccaaactccgtaggaaaactgggaaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22618542 |
ttccaaatattttgggaaaattgtcaaatttgaaatatttaacccttggtaacaattacttgaatggaactattccaaactcagtaggaaaactgggaaa |
22618443 |
T |
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| Q |
322 |
tctaattcacttggacctatctaataaccacttgtttgggggtcttccttgtagtataa |
380 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22618442 |
tctaatccacttggacatatctaataaccacttgtttgggggtcttccttgtagtataa |
22618384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 380
Target Start/End: Complemental strand, 23751349 - 23750991
Alignment:
| Q |
22 |
tctgtcactagatttgtctggaaacagacttcaaggagatgcactcgtcggtaatttacaatctgcaggatgcaatggatctggtttagaggaacttgac |
121 |
Q |
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| T |
23751349 |
tctgtcactagatttgtctggaaaccgacttcaaggagatgcactcatcggtaatttacaatctgcaagatgaaatggatctggtttagaggaacttgac |
23751250 |
T |
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| Q |
122 |
atgaccaacaacaatttcaatgatcaactgccgacatggttggggcaacttgaaaatatggtaatcctcacacttcaatccagttttttccatggtccta |
221 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
23751249 |
atgaccaacaacaatttcaataatcaactgccgacatggttggggcaacttgaaaatatggtaaacctcacacttcaatcaagttttttccatggtccta |
23751150 |
T |
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| Q |
222 |
ttccaaatattttgggaaaattgtcaaatttgaaatatttaacccttggtaacaattacttgaatggaactattccaaactccgtaggaaaactgggaaa |
321 |
Q |
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| T |
23751149 |
ttccaaatattttgggaaaattgtcaaatttgaaatatttaacccttggtaacaattacttgaatggaactattccaaactcagtaggaaaactgggaaa |
23751050 |
T |
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| Q |
322 |
tctaattcacttggacctatctaataaccacttgtttgggggtcttccttgtagtataa |
380 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23751049 |
tctaatccacttggacatatctaataaccacttgtttgggggtcttccttgtagtataa |
23750991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 23852056 - 23851694
Alignment:
| Q |
16 |
tcatcatctgtcactagatttgtctggaaacagacttcaaggagatgcactcgtcggtaatttacaatctgcaggatgcaatggatctggtttagaggaa |
115 |
Q |
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||||| ||||||| ||||||||||||||||| ||||||||||||| ||||| || || || ||| | ||| | |||||||||||| || ||| |||| |
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| T |
23852056 |
tcatcttctgtcaatagatttgtctggaaacggacttcaaggagacgcacttgttggcaacttaaattctacgagatgcaatggatttgatttgctggaa |
23851957 |
T |
|
| Q |
116 |
cttgacatgaccaacaacaatttcaatgatcaactgccgacatggttggggcaacttgaaaatatggtaatcctcacacttcaatccagttttttccatg |
215 |
Q |
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|| || ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| |||||||||| | | |||| || ||||||||||||| |
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| T |
23851956 |
ctggatttgaccaacaacaaattcaatgatcagctgccaacatggttggggcagcttgaaaatctggtaatccttaaaattcattcaagttttttccatg |
23851857 |
T |
|
| Q |
216 |
gtcctattccaaatattttgggaaaattgtcaaatttgaaatatttaacccttggtaacaattacttgaatggaactattccaaactccgtaggaaaact |
315 |
Q |
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| T |
23851856 |
ggcctattccaaattttttgggaaaattgtcaaacttgaaatatttaatccttgctaacaatcacttgaatggaactattccaaactccctaggaaaact |
23851757 |
T |
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| Q |
316 |
gggaaatctaattcacttggacctatctaataaccacttgtttgggggtcttccttgtagtat |
378 |
Q |
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| T |
23851756 |
gggaaatctaatccagttggacctatcaaataaccacttgtttgggggtcttccttgtagtat |
23851694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 20573430 - 20573494
Alignment:
| Q |
22 |
tctgtcactagatttgtctggaaacagacttcaaggagatgcactcgtcggtaatttacaatctg |
86 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
20573430 |
tctgtcactagatttgtctggaaacagacttgaaggagatgcactcgtcggtaatctaaaatctg |
20573494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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