View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15878_low_18 (Length: 275)
Name: NF15878_low_18
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 8520220 - 8520482
Alignment:
| Q |
1 |
aaaggaaaacccaggaccactcgacaagcagaagaatgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcatgtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8520220 |
aaaggaaaacccaggaccactcgacaagcaaaagaatgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcatgtc |
8520319 |
T |
|
| Q |
101 |
atattaaatcaagctggttggattagtatgacaaaatgcattatcatcttcatattatagcaggctgctcttgtcagttgtagatcctatatatagactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8520320 |
atattaaatcaagctggttggattagtatgacaaaatgcattatcatcttcatattatagcaggctgctcttgtcagttgcagatcctatatatagactt |
8520419 |
T |
|
| Q |
201 |
cttataggataatatataacattcaggcagtagctgcaacatcaaaatttagtgtatgtccta |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8520420 |
cttataggataatatataacattcaggcagtagctgcaacatcaaaatttagtgtatgtccta |
8520482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 18759906 - 18760100
Alignment:
| Q |
37 |
tgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaatcaagctggttggattagtatgacaaaa |
136 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | | || |||||| |||| |
|
|
| T |
18759906 |
tgacaaatagagaatttcagcaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaagcaggatagatcaatgggtatgataaaa |
18760005 |
T |
|
| Q |
137 |
tgcattatcatcttcat-attatagcaggctgctcttgtcagtt--------gtagatcctatatatagacttcttataggataatatataacat |
222 |
Q |
| |
|
| ||||||||||||||| || |||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18760006 |
tacattatcatcttcatgtttttagcagactgctcttgtcagttgcagatcggcagatcctatatataaacttcttataggataatatataacat |
18760100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 37 - 222
Target Start/End: Complemental strand, 10981747 - 10981553
Alignment:
| Q |
37 |
tgacaaatagagaaattcaacaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaatcaagctggttggattagtatgacaaaa |
136 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | | || |||||| |||| |
|
|
| T |
10981747 |
tgacaaatagagaatttcagcaatgaaatacaagataaaatgcattataggatctgttcatgtcatattaaagcaggatagatcaatgggtatgataaaa |
10981648 |
T |
|
| Q |
137 |
tgcattatcatcttcat-attatagcaggctgctcttgtcagtt--------gtagatcctatatatagacttcttataggataatatataacat |
222 |
Q |
| |
|
| ||||||||||||||| || |||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10981647 |
tacattatcatcttcatgtttttagcagactgctcttgtcagttgcagatcggcagatcctatatataaacttcttataggataatatataacat |
10981553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 11524352 - 11524472
Alignment:
| Q |
129 |
tgacaaaa-tgcattatcatcttcatattatagcaggctgctcttgtcagttgtagatcctatatatagacttcttataggataatatataacattcagg |
227 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| ||| ||||| || ||||||||| |||||||||| |||||||||| | || | |||| |
|
|
| T |
11524352 |
tgacaaaactgcattatcttcttcatattatagcaggctgctcatgttagttgcagctcctatatacagacttcttacaggataatatcttacttgcagg |
11524451 |
T |
|
| Q |
228 |
cagtagctgcaacatcaaaat |
248 |
Q |
| |
|
|| |||||||| ||||||||| |
|
|
| T |
11524452 |
cactagctgcagcatcaaaat |
11524472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University