View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_low_2 (Length: 671)
Name: NF15878_low_2
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 567 - 655
Target Start/End: Complemental strand, 43164519 - 43164431
Alignment:
| Q |
567 |
ggttatgaaattcattaatatgattgaagactataaaaagttaaagtgaaaactactaaactaaaggatgatcaacatatgtatttcat |
655 |
Q |
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| T |
43164519 |
ggttatgaaatttattaatatgattgaagactataaaaagttaaagtgaaaactactaaactaaaggatgatcaacatatgtatttcat |
43164431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 496
Target Start/End: Original strand, 15298577 - 15298716
Alignment:
| Q |
357 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
456 |
Q |
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| T |
15298577 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacataaccattatggagaaagtgagatgtatgctgaaaa |
15298676 |
T |
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| Q |
457 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
496 |
Q |
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| T |
15298677 |
tggctaagctgccaaagccattttggggtgaagctgttca |
15298716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 496
Target Start/End: Original strand, 14176057 - 14176196
Alignment:
| Q |
357 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
456 |
Q |
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| T |
14176057 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
14176156 |
T |
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| Q |
457 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
496 |
Q |
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| T |
14176157 |
tggctaagctgccaaagccattttggggagaagctgttca |
14176196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 496
Target Start/End: Complemental strand, 28609820 - 28609681
Alignment:
| Q |
357 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
456 |
Q |
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| T |
28609820 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
28609721 |
T |
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| Q |
457 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
496 |
Q |
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| T |
28609720 |
tggctaagctgccaaagccattttggggagaagctgttca |
28609681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 357 - 496
Target Start/End: Original strand, 12932787 - 12932926
Alignment:
| Q |
357 |
atcagacatgaaaagacagttcctggaaccccacagcacaatggcgtagccgagaggatgaaccgcaccattgtggagaaggtgagaagcatgctcagaa |
456 |
Q |
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| T |
12932787 |
atcagacatgagaagacggttcctggcaccccacaacataatggtgtagctgaaagaatcaacagaaccattatggagaaagtgagatgtatgctgaaaa |
12932886 |
T |
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| Q |
457 |
tggctaaactgcctaagtcattctggggtgaagcagttca |
496 |
Q |
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| T |
12932887 |
tggctaagctgccaaagccattttgggtagaagctgttca |
12932926 |
T |
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