View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_low_22 (Length: 259)
Name: NF15878_low_22
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 3007470 - 3007716
Alignment:
| Q |
13 |
acttggagttgttttagccattccaccttttaactatcctgttaatctagctgtttcaaagattgctccagctcttattgctggaaactccattgtcctt |
112 |
Q |
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| T |
3007470 |
acttggagttgttttagccattccaccttttaactatcctgttaatctagctgtttcaaagattggtccagctattattgctggaaactccattgtcctt |
3007569 |
T |
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| Q |
113 |
aaacctccaacccaggtatacaactattcatagaccatatacatcataatagttgtagttgtagaaaatatttttgatatatttcaaagtagcgaataga |
212 |
Q |
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| T |
3007570 |
aaacctccaacccaggtatacaactattcatagaccatatacatcataatagttgtagttgtagaaaatatttttgatatatttcaaagtagcgaataga |
3007669 |
T |
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| Q |
213 |
gagcagaatgcagatgctgatacgtttatatagattattctaaccta |
259 |
Q |
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| T |
3007670 |
gagcagaatgcagatgctgatacgtttatatagattattctaaccta |
3007716 |
T |
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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 54726951 - 54726847
Alignment:
| Q |
26 |
ttagccattccaccttttaactatcctgttaatctagctgtttcaaagattgctccagctcttattgctggaaactccattgtccttaaacctccaaccc |
125 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||||| || ||||| || || |||||||| | |
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| T |
54726951 |
ttagccattccaccttttaactatcctgtcaatcttgctgtctcaaaaattgctcctgcactcattgctggaaattctattgtgctcaagcctccaactc |
54726852 |
T |
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| Q |
126 |
aggta |
130 |
Q |
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||||| |
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| T |
54726851 |
aggta |
54726847 |
T |
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