View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15878_low_24 (Length: 250)
Name: NF15878_low_24
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 39922100 - 39922306
Alignment:
| Q |
28 |
cagtgatggaaaatcgccacattgctattttttcaaaagctgtcaaacaagaatattaccacattctcattccactcaatctnnnnnnntgtcatagcaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39922100 |
cagtgatggaaaatcgccacattgctattttttcaaaagctgtcaaacaagaatattaccacattctcattccactcaatctaaaaaaatgtcatagcaa |
39922199 |
T |
|
| Q |
128 |
gcaagtgcatgtatttaaaacaattaaatcaataaatcaacccatagttttttcatgtgacaaaatatattccatgattctttcttctctacttttaatg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39922200 |
gcaagtgcatgtatttaaaacaattaaatcaataaatcaacccatagttttttcatgtgacaaaatatattccatgattctttcttctctacttttaatg |
39922299 |
T |
|
| Q |
228 |
tcgataa |
234 |
Q |
| |
|
||||||| |
|
|
| T |
39922300 |
tcgataa |
39922306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University