View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_low_25 (Length: 250)
Name: NF15878_low_25
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_25 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 23750776 - 23751013
Alignment:
| Q |
13 |
aatattttgtgggattgtgccattcagaaagttttctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaa |
112 |
Q |
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| T |
23750776 |
aatattttgtgggattgtgccattcagaaagttttctgacacatcaaggttttcaaggctgactaattgctcaagactcctaggaatgacaccataaaaa |
23750875 |
T |
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| Q |
113 |
tgattagaagaaataatcaaggtgtttagactgatgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatacttta |
212 |
Q |
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| T |
23750876 |
tgattagaagaaataatcaaggtgtttagactgatgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatacttta |
23750975 |
T |
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| Q |
213 |
gattgacaagtgctgttatactacaaggaagaccccca |
250 |
Q |
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| T |
23750976 |
gtttgacaagtgctgttatactacaaggaagaccccca |
23751013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 22618169 - 22618406
Alignment:
| Q |
13 |
aatattttgtgggattgtgccattcagaaagttttctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaa |
112 |
Q |
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| T |
22618169 |
aatattttggggtattgtgccattcagagagttttctgacacatcaaggttttctaggctgactaattgctcaagactcctaggaatgacaccataaaaa |
22618268 |
T |
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| Q |
113 |
tgattagaagaaataatcaaggtgtttagactgatgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatacttta |
212 |
Q |
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| T |
22618269 |
tgattagaagaaataatcaaggtgtttagactgatgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatacttta |
22618368 |
T |
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| Q |
213 |
gattgacaagtgctgttatactacaaggaagaccccca |
250 |
Q |
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| T |
22618369 |
gattgacaagtgctgttatactacaaggaagaccccca |
22618406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 23851480 - 23851714
Alignment:
| Q |
16 |
attttgtgggattgtgccattcagaaagttttctgacacatcaaggttttctaggctgactaattgctcaagacttctaggaatgacaccataaaaatga |
115 |
Q |
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||||||||||||||| |||||||||||||| ||||| ||||||||| ||| ||| | |||| || | ||| ||| |||||||| ||||||| ||||| | |
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| T |
23851480 |
attttgtgggattgtaccattcagaaagttctctgagacatcaagggtttttagaataactagtttcccaatactcctaggaataacaccatcaaaatta |
23851579 |
T |
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| Q |
116 |
ttagaagaaataatcaaggtgtttagactgatgaattgtccaatacaattaggaagatatccggttaaattattattgttcagaatcaaatactttagat |
215 |
Q |
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| T |
23851580 |
ttagaagaaataatgaaggtttttagattgacaaattgtccaatacaatcaggaagagaacctgtcaaattattgttgttcagaaccaaataatttagat |
23851679 |
T |
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| Q |
216 |
tgacaagtgctgttatactacaaggaagaccccca |
250 |
Q |
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| T |
23851680 |
tgacaagttcggtcatactacaaggaagaccccca |
23851714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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