View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15878_low_27 (Length: 239)
Name: NF15878_low_27
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 219
Target Start/End: Complemental strand, 42608733 - 42608534
Alignment:
| Q |
21 |
agaaattcatctcttagtgaggtgtacaagtttaaacctc-ggcatctgtatatataatgcaatgttattactaattgagttaagttcacgtgaacgata |
119 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42608733 |
agaaattcatctcttaatgaggtgtataagtttaaacctttggcatctgtatatataatgtaatgttattactaattgagttaagttcacgtgaacgata |
42608634 |
T |
|
| Q |
120 |
acccttttttctagtaatatatactagtatgagtagtttaattttgactaggaaattaggaatgacactctctgaatcatggcaatgaataacatttgat |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42608633 |
actcttttttctagtaatatatactagtatgagtagtttaattttgactaggaaattaggaatgacactctctgaatcatggcaatgaataacatttgat |
42608534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 43400944 - 43400984
Alignment:
| Q |
70 |
atatataatgcaatgttattactaattgagttaagttcacg |
110 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
43400944 |
atatataatgcaatgctcttactaattgagttaagttcacg |
43400984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University