View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_low_3 (Length: 665)
Name: NF15878_low_3
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 402 - 623
Target Start/End: Original strand, 29828947 - 29829168
Alignment:
| Q |
402 |
tatttacaaaccaattttcaattgaatgtagactattttttccgaaatgattcatattattatggaaccat---gtttcaagtgaaattaacnnnnnnnn |
498 |
Q |
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| T |
29828947 |
tatttacaaaacaattttctattgaatgtagactattttttccgaaatgattcatattattatggaaccatattgttccaagtgaaattaacaaaagaaa |
29829046 |
T |
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| Q |
499 |
-tatacacatttttattttattnnnnnnnntggatgtgtatttgataacacatttt-ttattcaaacataattagagattaggagactcaacctaaaaat |
596 |
Q |
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| T |
29829047 |
atataaacaattttattttattaaaaaaa-tggatgtgta----ataacacatttttttattcaaacataattagagattaggagactcaatctaaaaat |
29829141 |
T |
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| Q |
597 |
agataactttattatattgacaaggtt |
623 |
Q |
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| T |
29829142 |
agataactttattatattgacaaggtt |
29829168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 29828869 - 29828983
Alignment:
| Q |
280 |
atttaataagggatgcgtatttaattttgaaattgcaatatgtgttcttcatcattcacatgaattatataacacatatttatttacaaaacaattttct |
379 |
Q |
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| T |
29828869 |
atttaataaaggatgcgtatttaattttgaaattgcaatatgtgttcttcatcattcacatgaattatataacacata--tatttacaaaacaattttct |
29828966 |
T |
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| Q |
380 |
attgaatgtagactatt |
396 |
Q |
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| T |
29828967 |
attgaatgtagactatt |
29828983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 29828702 - 29828803
Alignment:
| Q |
113 |
catgttagtaaaggaagagattcctttttggaccatcgtaaagttgtttgttagaataatgaaccaattgtgtgagaaaatatttatgcataagtaaaac |
212 |
Q |
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| T |
29828702 |
catgttagtaaaggaagagattcctttttggaccatcgtaaagttgtttgttagaataatgaaccaattgggtgagaaaatatttatgcataagtaaaac |
29828801 |
T |
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| Q |
213 |
gt |
214 |
Q |
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|| |
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| T |
29828802 |
gt |
29828803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 29828602 - 29828646
Alignment:
| Q |
13 |
aatatcaacgggaaaatttttaacctttcgtgacaataaaggtaa |
57 |
Q |
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| T |
29828602 |
aatatcaaagggaaaatttttaacctttcgtgacaataaaggtaa |
29828646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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