View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15878_low_35 (Length: 207)
Name: NF15878_low_35
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15878_low_35 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 40646862 - 40646671
Alignment:
| Q |
16 |
agagtagcgtttggagaggaagttgtttgtggcggaacagatttcggagaagtcgtagatgtttgggttttctgggagtgagttgcgaagagaggttaag |
115 |
Q |
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| T |
40646862 |
agagtagcgtttggagaggaagttatttgtggcggaacagatttcggagaagtcgtagatgtttgggttttctgggagtgagttgcgaagagaggttaag |
40646763 |
T |
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| Q |
116 |
gatgttctgcttgagattgatgtatcggttgagagatggaatccggttgaaccggcgtatgaggttgaagggttgtcggaaaatgatgatgt |
207 |
Q |
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| T |
40646762 |
gatgttctgcttgagattgatgtatcggttgagagatggaatccggttgaaccggcgtatgaggttgaagggttgtcggaaaatgatgatgt |
40646671 |
T |
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