View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15878_low_4 (Length: 564)

Name: NF15878_low_4
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15878_low_4
NF15878_low_4
[»] chr8 (12 HSPs)
chr8 (153-481)||(9624198-9624544)
chr8 (19-70)||(9624627-9624678)
chr8 (294-443)||(22756346-22756498)
chr8 (318-442)||(54189-54315)
chr8 (285-443)||(16595076-16595236)
chr8 (294-443)||(15001484-15001636)
chr8 (285-413)||(29610981-29611112)
chr8 (294-370)||(7591382-7591459)
chr8 (294-443)||(10932754-10932905)
chr8 (294-370)||(30501238-30501315)
chr8 (294-443)||(35225680-35225832)
chr8 (294-370)||(41548711-41548788)
[»] chr7 (2 HSPs)
chr7 (285-443)||(21408539-21408699)
chr7 (294-370)||(1363733-1363810)
[»] chr5 (4 HSPs)
chr5 (285-443)||(4689615-4689776)
chr5 (285-443)||(27838991-27839151)
chr5 (288-348)||(14011173-14011233)
chr5 (291-370)||(26180217-26180297)
[»] chr3 (4 HSPs)
chr3 (294-434)||(19906790-19906933)
chr3 (294-370)||(41682967-41683044)
chr3 (294-370)||(3867563-3867640)
chr3 (294-370)||(50386370-50386447)
[»] chr1 (8 HSPs)
chr1 (288-443)||(26733582-26733740)
chr1 (294-370)||(42512765-42512842)
chr1 (285-353)||(47242502-47242571)
chr1 (288-340)||(7146892-7146945)
chr1 (294-370)||(7837235-7837312)
chr1 (285-370)||(31574456-31574541)
chr1 (318-443)||(17887975-17888102)
chr1 (318-443)||(41967869-41967996)
[»] chr4 (10 HSPs)
chr4 (401-443)||(40792438-40792480)
chr4 (294-370)||(26083435-26083512)
chr4 (294-370)||(50178405-50178482)
chr4 (294-370)||(50729455-50729532)
chr4 (288-348)||(9807273-9807334)
chr4 (294-370)||(11056138-11056215)
chr4 (302-370)||(20517943-20518012)
chr4 (302-370)||(36497313-36497382)
chr4 (294-370)||(44640419-44640496)
chr4 (390-434)||(7554969-7555013)
[»] scaffold0025 (1 HSPs)
scaffold0025 (294-370)||(5365-5442)
[»] chr2 (4 HSPs)
chr2 (285-348)||(83385-83449)
chr2 (294-363)||(6896268-6896338)
chr2 (285-434)||(44284656-44284808)
chr2 (285-348)||(38623215-38623279)
[»] chr6 (7 HSPs)
chr6 (296-370)||(9614067-9614142)
chr6 (294-413)||(18597117-18597239)
chr6 (390-443)||(7396183-7396236)
chr6 (294-370)||(10485250-10485327)
chr6 (288-332)||(14925170-14925215)
chr6 (288-348)||(14925409-14925470)
chr6 (291-370)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 153 - 481
Target Start/End: Complemental strand, 9624544 - 9624198
Alignment:
Q  153 cggtctaactctatatcatgttaaaaagcacgattga----------aagaaaacaaattgagagaaagatgaattatttgagataagtcaaat------ 236  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| ||||||||||||||||||          
T  9624544 cggtctaactctatatcatgttaaaaagcacgattgagcccaactaaaagaaaacaaattgagagaaagatgaatcatttgagataagtcaaatgaaaaa 9624445  T
Q  237 -atgatacaattaggtgcgtttgatctgctnnnnnnntgaagaacatggcatgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctg 335  Q
     |||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9624444 tatgatacaattaggtgcgtttgatctgctaaaaaaatgaagaacatgacatgacatgacaacttcagttgtacactgtttatttgtaaaattgtttctg 9624345  T
Q  336 ggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaat 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9624344 ggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccacaacacaactttttgtttcatgcacaagttatctaaat 9624245  T
Q  436 tacaa-aaaattgtataagacnnnnnnnttattcaataccataaaaa 481  Q
    ||||| |||||||||||||||       |||||||||||||||||||    
T  9624244 tacaaaaaaattgtataagacaaaaaaattattcaataccataaaaa 9624198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9624678 - 9624627
Alignment:
Q  19 aaaatggatggcagcaaatcaatcagtaaatataaggaaattatatagcgtc 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9624678 aaaatggatggcagcaaatcaatcagtaaatataaggaaattatatagcgtc 9624627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 443
Target Start/End: Original strand, 22756346 - 22756498
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgc 390  Q
    |||||| ||||| |||| |||||| ||||||||| ||||||||||| | ||||||   ||| ||||||||| ||||||  ||||||||||   ||||       
T  22756346 acaactccagttatacaatgtttgatttgtaaaactgtttctgggataggacaaatttgaggcaagagacaagacaaaaacataaatttttatccctcat 22756445  T
Q  391 taaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
    || |||| ||||||||||||||| ||| | |||||||||||||| ||||||||    
T  22756446 tataccacaacacaactttttgtatcacgtacaagttatctaaaatacaaaaa 22756498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 442
Target Start/End: Complemental strand, 54315 - 54189
Alignment:
Q  318 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgctaaaccataacacaactttttgttt 415  Q
    ||||||||| |||||||| |||| ||||| | ||| ||||| |||||||||||  |||||||||| | || ||||||||||| | |||||||||||||      
T  54315 tttgtaaaactgtttctgagacatgacaatccggacacaagggacatgacaaaaacataaatttttgtcctttgctaaaccacatcacaactttttgtcc 54216  T
Q  416 catgcacaagttatctaaattacaaaa 442  Q
    ||   |||||||||| ||| |||||||    
T  54215 cacatacaagttatcgaaaatacaaaa 54189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 285 - 443
Target Start/End: Original strand, 16595076 - 16595236
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttc 381  Q
    ||||||| ||||||  |||||||| | |||||| |||||||| ||||||||||||||  |||||| | || |||| |||| ||||||  ||| || |||     
T  16595076 catgacaggacaacaccagttgtatattgtttgatttgtaaa-ttgtttctgggacagaacaaactgtaggcaagggacaggacaaaaacatgaagtttt 16595174  T
Q  382 gacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
    | |||| ||||| ||| |||||||||||||||  || | |||||||||||||| ||||||||    
T  16595175 gtccctcgctaatccacaacacaactttttgtcccacgtacaagttatctaaaatacaaaaa 16595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 443
Target Start/End: Complemental strand, 15001636 - 15001484
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttcgacccttgc 390  Q
    |||||||||||||| || |||||| ||||||||| |||||| |||||| ||||||| |||| ||| |||||  ||  ||||  ||||||| | ||||  |    
T  15001636 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaggacaaactggaggcaatagacagaacaaaaactgaaatttttgtccctcac 15001537  T
Q  391 taaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
     |||||| |||||||||||||||  || | |||||||||||||| ||| ||||    
T  15001536 caaaccacaacacaactttttgtcccacgtacaagttatctaaaataccaaaa 15001484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 413
Target Start/End: Original strand, 29610981 - 29611112
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttc 381  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||| |||||| |   |||||||     
T  29610981 catgacagaacaacttcagttgtccaatgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaattttt 29611080  T
Q  382 gacccttgctaaaccataacacaactttttgt 413  Q
    | |||| || |||||| |||||||||||||||    
T  29611081 gtccctcgccaaaccacaacacaactttttgt 29611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 7591382 - 7591459
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  7591382 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 7591459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 443
Target Start/End: Complemental strand, 10932905 - 10932754
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaaca-taaattttcgacccttgct 391  Q
    |||||||||||||||   |||||| ||| ||||||||||| ||||||||||||||   ||| |||||||||||| ||| | |||| ||| | ||||  ||    
T  10932905 acaacttcagttgtatggtgtttgatttataaaattgtttatgggacaagacaaagtagaggcaagagacatgataaaaactaaaattttgtccctcact 10932806  T
Q  392 aaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
    |||||| | |||||||||| ||| || | |||| || |||||| ||| ||||    
T  10932805 aaaccacatcacaacttttagttccacgtacaatttgtctaaaataccaaaa 10932754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 30501315 - 30501238
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||  || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  30501315 acaacttcagttgcccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 30501238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 443
Target Start/End: Complemental strand, 35225832 - 35225680
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacata--aattttcgacccttgc 390  Q
    |||||| ||||||| || |||||| |||||||||  ||||| |||||| ||||||| |||| |||| |||| |||||| |    |||||| | |||| ||    
T  35225832 acaactccagttgtccagtgtttggtttgtaaaacagtttcagggacaggacaaactggaggcaagggacaggacaaaaactgcaatttttgtccctcgc 35225733  T
Q  391 taaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
     |||||| | |||||||||||||  || | ||||||| |||||| ||||||||    
T  35225732 caaaccacatcacaactttttgtcacaagtacaagttgtctaaaatacaaaaa 35225680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 41548788 - 41548711
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| |  ||| ||||||| |||| ||||||||| ||||||    
T  41548788 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagatacatgacaaactggaggcaagagacaggacaaa 41548711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 443
Target Start/End: Original strand, 21408539 - 21408699
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacataaatt-ttcg 382  Q
    |||||||||||| ||  ||||||||| | |||| ||||||||  ||||| |||||||| |||||| |||| |||| ||||||||||| | |||   || |    
T  21408539 catgacatgacatctctagttgtacaatatttgatttgtaaagctgtttttgggacaacacaaactggaggcaagggacatgacaaagacaaaacatttg 21408638  T
Q  383 acccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
     ||||   ||||||| |||| |||||||| ||||||| |||||||||||||| ||||||||    
T  21408639 tccctcattaaaccacaacataactttttatttcatgtacaagttatctaaaatacaaaaa 21408699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 1363810 - 1363733
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||||||||||  | ||| ||||||| |||| |||| |||||||||||    
T  1363810 acaacttcagttgtccagtgtttgatttgtaaaattgtttcatgtacaggacaaactggaggcaagggacatgacaaa 1363733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 285 - 443
Target Start/End: Original strand, 4689615 - 4689776
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttc 381  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||  || | |||||     
T  4689615 catgacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaacacatattttt 4689714  T
Q  382 gacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
    | ||||  | |||||| |||||||||||||||  || | |||||||  ||||| ||||||||    
T  4689715 gtccctcaccaaaccacaacacaactttttgtcccacgtacaagttgcctaaaatacaaaaa 4689776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 443
Target Start/End: Original strand, 27838991 - 27839151
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa-cataaattttcg 382  Q
    |||||||  |||||| ||||||| || |||||| ||||||||| |||||| || ||| ||||||| | || |||  |||| || ||| |||||||||| |    
T  27838991 catgacagaacaactccagttgtccagtgtttgatttgtaaaactgtttcaggtacatgacaaactgaaggcaatggacaggataaaacataaatttttg 27839090  T
Q  383 acccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
     ||||  | ||||||||| |||||||||||| ||||| ||||||| |||||| ||| ||||    
T  27839091 tccctcaccaaaccataaaacaactttttgtctcatgtacaagttgtctaaaataccaaaa 27839151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 14011173 - 14011233
Alignment:
Q  288 gacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaac 348  Q
    |||| |||||||||||||||||  |||||| |||| |||||||||  |||||| |||||||    
T  14011173 gacaggacaacttcagttgtactatgtttgattgtgaaattgttttagggacatgacaaac 14011233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 26180217 - 26180297
Alignment:
Q  291 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    ||||||||||||||| |||| | |||| ||||||||| ||||| ||||||| || |||  |||||||| ||| ||||||||    
T  26180217 atgacaacttcagttatacaatatttgatttgtaaaactgtttttgggacatgataaattggagacaaaagatatgacaaa 26180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 434
Target Start/End: Complemental strand, 19906933 - 19906790
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgacccttgc 390  Q
    |||||||||||||| || |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||| |||||| |   ||||||| | ||||  |    
T  19906933 acaacttcagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaatttttgtccctcac 19906834  T
Q  391 taaaccataacacaactttttgtttcatgcacaagttatctaaa 434  Q
     |||||| | ||||||||||||| ||| | ||||||| ||||||    
T  19906833 caaaccacagcacaactttttgtctcacgtacaagttgtctaaa 19906790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 41682967 - 41683044
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  41682967 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaagacaaa 41683044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 3867563 - 3867640
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||| ||||||| |  |||||| ||||||||| |||||| ||||||  ||| || |||||||||||||||||||||    
T  3867563 acaactccagttgtccggtgtttgatttgtaaaactgtttcagggacagaacatactggagacaagagacatgacaaa 3867640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 50386370 - 50386447
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||| |||||||  | |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||||||||||    
T  50386370 acaactccagttgtctagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacatgacaaa 50386447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 443
Target Start/End: Complemental strand, 26733740 - 26733582
Alignment:
Q  288 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgac 384  Q
    ||||||||||||||||||||||  |||||| ||||||||| ||||| | ||||  |||||||  ||||| |  ||||||||||| |   ||||| | | |    
T  26733740 gacatgacaacttcagttgtacgatgtttgatttgtaaaactgtttttaggaccggacaaactagagacgatggacatgacaaaaactgaaattcttgtc 26733641  T
Q  385 ccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
    ||   |||||||||||||||||||||||  ||||| ||||||| |||||| ||| ||||    
T  26733640 ccccactaaaccataacacaactttttgcctcatgtacaagttgtctaaaataccaaaa 26733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 42512765 - 42512842
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  42512765 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 42512842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 47242502 - 47242571
Alignment:
Q  285 catgacatgacaacttcagttgtacactgttt-gtttgtaaaattgtttctgggacaagacaaacgggag 353  Q
    ||||||||||||||||||||||||   |||||  ||||||||||||||| ||||||| ||||||| ||||    
T  47242502 catgacatgacaacttcagttgtatggtgtttaatttgtaaaattgtttatgggacatgacaaactggag 47242571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 7146945 - 7146892
Alignment:
Q  288 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggaca 340  Q
    ||||| ||||||||||||||| | |||||| ||||||||||||||| |||||||    
T  7146945 gacataacaacttcagttgtatagtgtttgatttgtaaaattgtttttgggaca 7146892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 7837312 - 7837235
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||  ||| |||| |||||||||||    
T  7837312 acaacttcagttgttcagtgtttgatttgtaaaactgtttcaggaacatgacaaactagaggcaagggacatgacaaa 7837235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 31574541 - 31574456
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||||||||||||||| | ||  ||||||||| | ||||    |||| |||||| ||||| |||| ||||||||||    
T  31574541 catgacatgacaacttcagttgtacaattttgatttgtaaaactatttcaaaaacaaaacaaactggagataagaaacatgacaaa 31574456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 443
Target Start/End: Complemental strand, 17888102 - 17887975
Alignment:
Q  318 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgacccttgctaaaccataacacaactttttgttt 415  Q
    ||||||||| |||||| || ||||||||||| |||| |||| |||| |||||| |   | ||||| | |||| || |||||| |||||||||||||||      
T  17888102 tttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaactcatatttttgtccctcgccaaaccacaacacaactttttgtcc 17888003  T
Q  416 catgcacaagttatctaaattacaaaaa 443  Q
    || | ||||||| |||||| ||| ||||    
T  17888002 cacgtacaagttgtctaaaataccaaaa 17887975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 443
Target Start/End: Original strand, 41967869 - 41967996
Alignment:
Q  318 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttcgacccttgctaaaccataacacaactttttgttt 415  Q
    ||||||||| |||||| || ||| |||||||  ||| ||||||||| |||||| |   | ||||| | ||||| | |||||| ||||||||||||||| |    
T  41967869 tttgtaaaactgtttcaggtacaggacaaactagaggcaagagacaagacaaaaactcatatttttgtcccttaccaaaccacaacacaactttttgtct 41967968  T
Q  416 catgcacaagttatctaaattacaaaaa 443  Q
    || | ||||||| |||||| ||| ||||    
T  41967969 cacgtacaagttgtctaaaataccaaaa 41967996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 443
Target Start/End: Complemental strand, 40792480 - 40792438
Alignment:
Q  401 cacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  40792480 cacaactttttgtttcatgtacaagttatctaaaatacaaaaa 40792438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 26083512 - 26083435
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    ||||||||||||||  | |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||||||||||    
T  26083512 acaacttcagttgtttagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacatgacaaa 26083435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 50178405 - 50178482
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  50178405 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 50178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 50729455 - 50729532
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||||||||||    
T  50729455 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacatgacaaa 50729532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 9807334 - 9807273
Alignment:
Q  288 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 348  Q
    |||| ||||||||||||||| || |||||| ||||||||| |||||| || |||||||||||    
T  9807334 gacaggacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaac 9807273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 11056215 - 11056138
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| |||| |||| ||||||    
T  11056215 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaa 11056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 20517943 - 20518012
Alignment:
Q  302 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||| || |||||| ||||||||| |||||| || ||||||||||| |||| ||||||||| ||||||    
T  20517943 agttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagagacaggacaaa 20518012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 36497382 - 36497313
Alignment:
Q  302 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||| || |||||| ||||||||| |||||| || ||| ||||||| |||||||||||||| ||||||    
T  36497382 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggagacaagagacaggacaaa 36497313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 44640496 - 44640419
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||| | | |||||||  ||| ||||||||| ||||||    
T  44640496 acaacttcagttgtacagtgtttgatttgtaaaactgtttatggaaaatgacaaactagaggcaagagacaagacaaa 44640419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 7554969 - 7555013
Alignment:
Q  390 ctaaaccataacacaactttttgtttcatgcacaagttatctaaa 434  Q
    |||||||||||||||||||||||| ||| | ||||||| ||||||    
T  7554969 ctaaaccataacacaactttttgtctcacgtacaagttgtctaaa 7555013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 294 - 370
Target Start/End: Original strand, 5365 - 5442
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  5365 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 5442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 83449 - 83385
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 348  Q
    ||||||| |||||||||||||| ||| |||||| ||||||||| ||||| ||||||| |||||||    
T  83449 catgacaagacaacttcagttgcacagtgtttgatttgtaaaactgtttgtgggacatgacaaac 83385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 6896338 - 6896268
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagaca 363  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||| |||||| |||| |||| ||||    
T  6896338 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaaaacaaactggaggcaagggaca 6896268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 434
Target Start/End: Complemental strand, 44284808 - 44284656
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttc 381  Q
    |||||||  ||||||  |||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| |||||| |   | |||||     
T  44284808 catgacagaacaactagagttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaagacaaaaactcatattttt 44284709  T
Q  382 gacccttgctaaaccataacacaactttttgtttcatgcacaagttatctaaa 434  Q
    | ||||  |||||||| | ||||||||||||| ||| | ||||||| ||||||    
T  44284708 gtccctcactaaaccacagcacaactttttgtctcacgtacaagttgtctaaa 44284656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 38623215 - 38623279
Alignment:
Q  285 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 348  Q
    |||||||| |||||||||||| | || |||||| ||||||||| |||||| |||||| |||||||    
T  38623215 catgacataacaacttcagttatccaatgtttgatttgtaaaactgtttcagggacaggacaaac 38623279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 9614142 - 9614067
Alignment:
Q  296 aacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    ||||||||||||||| |||||| ||||||||| ||||||  ||||| || |||| |||| |||| |||||||||||    
T  9614142 aacttcagttgtacaatgtttgatttgtaaaactgtttcaaggacaggataaactggaggcaagggacatgacaaa 9614067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 413
Target Start/End: Original strand, 18597117 - 18597239
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgc 390  Q
    |||| ||||||||| || |||||| ||||||||| |||||| |||| | ||||||| |||| |||| |||||||||||  |  ||||||| | ||||  |    
T  18597117 acaatttcagttgttcagtgtttgatttgtaaaactgtttcagggatatgacaaaccggaggcaagggacatgacaaaatctgaaatttttgtccctcac 18597216  T
Q  391 taaaccataacacaactttttgt 413  Q
     |||||| |||||||||||||||    
T  18597217 caaaccacaacacaactttttgt 18597239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 7396183 - 7396236
Alignment:
Q  390 ctaaaccataacacaactttttgtttcatgcacaagttatctaaattacaaaaa 443  Q
    ||||||||  |||||||||||||| ||| | |||||||||||||| ||||||||    
T  7396183 ctaaaccactacacaactttttgtctcacgtacaagttatctaaaatacaaaaa 7396236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 370
Target Start/End: Complemental strand, 10485327 - 10485250
Alignment:
Q  294 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    |||||| ||||||| || |||||| ||||||||||| |||| || ||| ||||||| |||| ||||||||| ||||||    
T  10485327 acaactccagttgtccagtgtttgatttgtaaaattatttcaggtacaggacaaactggaggcaagagacaggacaaa 10485250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 14925170 - 14925215
Alignment:
Q  288 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgttt 332  Q
    |||||||||||||||||||| || |||||| |||||||||||||||    
T  14925170 gacatgacaacttcagttgtccagtgtttgatttgtaaaattgttt 14925215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 14925409 - 14925470
Alignment:
Q  288 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 348  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||    
T  14925409 gacatgacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaac 14925470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 35004084 - 35004164
Alignment:
Q  291 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 370  Q
    ||||||||| ||||||| |  |||||| |||||||||  |||| | |||||||| |||| |||||||||||||| ||||||    
T  35004084 atgacaactccagttgtgcggtgtttgatttgtaaaacggtttataggacaagataaaccggagacaagagacaagacaaa 35004164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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