View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15878_low_9 (Length: 446)

Name: NF15878_low_9
Description: NF15878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15878_low_9
NF15878_low_9
[»] chr8 (2 HSPs)
chr8 (10-428)||(294387-294805)
chr8 (321-382)||(4561103-4561164)
[»] chr4 (2 HSPs)
chr4 (321-359)||(46676699-46676737)
chr4 (321-364)||(17912817-17912860)
[»] scaffold0167 (1 HSPs)
scaffold0167 (321-362)||(23493-23534)
[»] chr2 (2 HSPs)
chr2 (321-357)||(10084306-10084342)
chr2 (333-382)||(40149015-40149064)
[»] chr1 (4 HSPs)
chr1 (320-359)||(13031125-13031164)
chr1 (321-360)||(31626239-31626278)
chr1 (321-375)||(19809943-19809997)
chr1 (320-366)||(21641404-21641450)
[»] chr6 (1 HSPs)
chr6 (329-375)||(15544484-15544530)
[»] chr5 (2 HSPs)
chr5 (321-359)||(15844510-15844548)
chr5 (320-366)||(22198985-22199031)


Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 294805 - 294387
Alignment:
Q  10 aagaatatggtggatgttgaggaggaaaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgca 109  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294805 aagaatgtggtggatgttgaggaggacaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgca 294706  T
Q  110 tcattaacccctttcttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaacaggctatagcac 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  294705 tcattaaccccttacttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaataggctatagcac 294606  T
Q  210 agaccgacacctcggattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacacatgtccggcttgttaacgtt 309  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294605 agactgacacctcggattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacacatgtccggcttgttaacgtt 294506  T
Q  310 ggtgtagtgtctcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgtttatcacttattgactcatgttcatgt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294505 ggtgtagtgtctcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgtttatcacttattgactcatgttcatgt 294406  T
Q  410 gatatctctttcaatgtgg 428  Q
    |||||||||||||||||||    
T  294405 gatatctctttcaatgtgg 294387  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 382
Target Start/End: Original strand, 4561103 - 4561164
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgt 382  Q
    ||||| |||||||| || ||||||||| | |||||||||||||| ||| |||||| ||||||    
T  4561103 tcttataatttgggatgaacctaactctaccctacaaaatcggcttgttaggtgatgattgt 4561164  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 359
Target Start/End: Complemental strand, 46676737 - 46676699
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaaaa 359  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  46676737 tcttaaaatttgggttggacctaactcaaccctacaaaa 46676699  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 364
Target Start/End: Complemental strand, 17912860 - 17912817
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaaaatcggc 364  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||    
T  17912860 tcttaaaatttgggttgggcctaactcaaccctacaaaaccggc 17912817  T

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Target: scaffold0167 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 23534 - 23493
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaaaatcg 362  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  23534 tcttaaaaattgagttggacctaactcaatcctacaaaatcg 23493  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 10084342 - 10084306
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaa 357  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10084342 tcttaaaatttgggttggacataactcaatcctacaa 10084306  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 40149015 - 40149064
Alignment:
Q  333 ggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgt 382  Q
    ||||||||||||| ||| || ||||||||||| |||||||||| ||||||    
T  40149015 ggttggacctaacacaaccccacaaaatcggcttgtgaggtgaggattgt 40149064  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 359
Target Start/End: Original strand, 13031125 - 13031164
Alignment:
Q  320 ctcttaaaatttgggttggacctaactcaatcctacaaaa 359  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  13031125 ctcttagaatttgggttggacctaactcaaccctacaaaa 13031164  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 31626239 - 31626278
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaaaat 360  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  31626239 tcttagaatttgggttggacctaactcaaccctacaaaat 31626278  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 19809943 - 19809997
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtga 375  Q
    ||||||| |||||||||| |||||||||| | |||||||||||| ||| ||||||    
T  19809943 tcttaaattttgggttgggcctaactcaaccttacaaaatcggcttgtaaggtga 19809997  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 21641404 - 21641450
Alignment:
Q  320 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 366  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  21641404 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 21641450  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 15544484 - 15544530
Alignment:
Q  329 tttgggttggacctaactcaatcctacaaaatcggcctgtgaggtga 375  Q
    |||||||||||||||||| |||| ||||||| |||| ||||||||||    
T  15544484 tttgggttggacctaactgaatcttacaaaaccggcttgtgaggtga 15544530  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 15844510 - 15844548
Alignment:
Q  321 tcttaaaatttgggttggacctaactcaatcctacaaaa 359  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  15844510 tcttaaaatttgggttgggcctaactcaatcttacaaaa 15844548  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 22198985 - 22199031
Alignment:
Q  320 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 366  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  22198985 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 22199031  T

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