View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15879_high_1 (Length: 433)
Name: NF15879_high_1
Description: NF15879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15879_high_1 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 33325558 - 33325141
Alignment:
| Q |
16 |
aaaagttgagtaaggttttgtcctagggacatctttggaggtgggttgaaaactcacgcgagagttaacatttttcttaagtattgaaacttgttctcgc |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33325558 |
aaaagttgagtaaggttttgtcttagggacatctttggaggtgggttgaaaattcacacgagagttaacatttttcttaagtattgaaacttgttctcgc |
33325459 |
T |
|
| Q |
116 |
gtgagttttaaaatagcaacactcacttctctagtgttgcccaaatcatgatctacctgaataggaggcatgtcaaactcatgatgatgccgatgtaagg |
215 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33325458 |
gtgagtttcacaatagcaacactcacttctctagtgttgcccaaatcatgatctacctgaataggaggcgtgtcaaactcatgatgatgccgatgtaagg |
33325359 |
T |
|
| Q |
216 |
atgaagaatgtgtgagtttgcgtgaattcaacatagttcgatcgtgacacggaaactcacttggatccaagttctctccacgcgccaacttagcccatgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33325358 |
atgaagaatgtgtgagtttgcgtgaattcaacatagttcgatcgtgacacggaaactcacttggatccaaattctctccacgcgccaacttagcccatgc |
33325259 |
T |
|
| Q |
316 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggccacacctaatgtaaaaccgccgcaatggaaccttataagttgccctgcc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| ||||| |
|
|
| T |
33325258 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggcaacacctaatgtaaaaccgccacaattgaaccttgtaagttgcactgcc |
33325159 |
T |
|
| Q |
416 |
aataagggaatatcttca |
433 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33325158 |
aataagggaatatcttca |
33325141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 33339196 - 33339613
Alignment:
| Q |
16 |
aaaagttgagtaaggttttgtcctagggacatctttggaggtgggttgaaaactcacgcgagagttaacatttttcttaagtattgaaacttgttctcgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33339196 |
aaaagttgagtaaggttttgtcctagggacatctttggaggtgggttgaaaactcatgcgagagttaacatttttcttaagtattgaaacttgttcttgt |
33339295 |
T |
|
| Q |
116 |
gtgagttttaaaatagcaacactcacttctctagtgttgcccaaatcatgatctacctgaataggaggcatgtcaaactcatgatgatgccgatgtaagg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33339296 |
gtgagttttaaaatagcaacactcacttctctagtgttgcccacatcacgacctacctgaataggaggcatgtcaaactcatgatgatgtcgatgtaagg |
33339395 |
T |
|
| Q |
216 |
atgaagaatgtgtgagtttgcgtgaattcaacatagttcgatcgtgacacggaaactcacttggatccaagttctctccacgcgccaacttagcccatgc |
315 |
Q |
| |
|
||| ||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| || |
|
|
| T |
33339396 |
atggagaatgtatgagtttgtatgaattcaacacggttcgatcgtgacacggaaattcacttgaatccaaattctctccacgcgccaacttagcccacgc |
33339495 |
T |
|
| Q |
316 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggccacacctaatgtaaaaccgccgcaatggaaccttataagttgccctgcc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| ||||| |
|
|
| T |
33339496 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggcaacacctaatgtaaaaccgccacaattgaaccttgtaagttgcactgcc |
33339595 |
T |
|
| Q |
416 |
aataagggaatatcttca |
433 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33339596 |
aataagggaatatcttca |
33339613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University