View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15879_high_2 (Length: 331)
Name: NF15879_high_2
Description: NF15879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15879_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 87 - 319
Target Start/End: Complemental strand, 986474 - 986242
Alignment:
| Q |
87 |
ccaattatcttcctttctgtttacaaccattctctcctccgcaggaaagaatggtaacggttaaactgtaaaaactggcaaaaccataaaataccgattt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
986474 |
ccaattatcttcctttctgtttacaaccatgctgtcctccgcaggaaagaatggcaacggttaaactgtaaaaactggcaaaaccataaaataccgattt |
986375 |
T |
|
| Q |
187 |
ccagtcttctgtgcttcacctcatctcttgaacacaatgatcaaggattctggaaaattaaggacctctttgaggtgcaaaacaaaagcaacctgaactt |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
986374 |
ccagtcttctgtgcttcacctcatctcttgaacacaatgatcaaggattctggaaaattaaggacctctttgaggtgcaaaacaaaagcaacctgaactt |
986275 |
T |
|
| Q |
287 |
tgatcttcaggaatcattccaccacctttgctt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
986274 |
tgatcttcaggaatcattccaccacctttgctt |
986242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University