View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15879_high_6 (Length: 222)
Name: NF15879_high_6
Description: NF15879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15879_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 33325195 - 33324985
Alignment:
| Q |
2 |
aaaaccgccgcaatggaaccttgtaagttgcactgccaataagggaatatcttcaatgggaagattgtaattaatgtttggtatgagttgtgacaccaaa |
101 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33325195 |
aaaaccgccacaattgaaccttgtaagttgcactgccaataagggaatatcttcaatgggaagattgtaattaatgtttggtatgagttgtgataccaaa |
33325096 |
T |
|
| Q |
102 |
ttagttggtacaaaatcacccaattggttcaaattggttaattcttcacatttggcttctaatagaagtgctcctttggcattacaatgaatttcccacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33325095 |
ttagttggtacaaaatcacccaattggttcaaattggttaattcttcacatttggcttctaatagaagtgctcctttggcattacaatgaatttcccatc |
33324996 |
T |
|
| Q |
202 |
ttccacctttg |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
33324995 |
ttccacctttg |
33324985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 33339559 - 33339769
Alignment:
| Q |
2 |
aaaaccgccgcaatggaaccttgtaagttgcactgccaataagggaatatcttcaatgggaagattgtaattaatgtttggtatgagttgtgacaccaaa |
101 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33339559 |
aaaaccgccacaattgaaccttgtaagttgcactgccaataagggaatatcttcaatgggaagattgtaattaatgtttggtatgagttgtgataccaaa |
33339658 |
T |
|
| Q |
102 |
ttagttggtacaaaatcacccaattggttcaaattggttaattcttcacatttggcttctaatagaagtgctcctttggcattacaatgaatttcccacc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33339659 |
ttagttggtacaaaatcacccaattggttcaaattggttaattcttcacatttggcttctaatagaagtgctcctttggcattacaatgaatttcccatc |
33339758 |
T |
|
| Q |
202 |
ttccacctttg |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
33339759 |
ttccacctttg |
33339769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University