View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15879_low_2 (Length: 433)
Name: NF15879_low_2
Description: NF15879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15879_low_2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 33325558 - 33325141
Alignment:
| Q |
16 |
aaaagttgagtaaggttttgtcctagggacatctttggaggtgggttgaaaactcacgcgagagttaacatttttcttaagtattgaaacttgttctcgc |
115 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33325558 |
aaaagttgagtaaggttttgtcttagggacatctttggaggtgggttgaaaattcacacgagagttaacatttttcttaagtattgaaacttgttctcgc |
33325459 |
T |
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| Q |
116 |
gtgagttttaaaatagcaacactcacttctctagtgttgcccaaatcatgatctacctgaataggaggcatgtcaaactcatgatgatgccgatgtaagg |
215 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33325458 |
gtgagtttcacaatagcaacactcacttctctagtgttgcccaaatcatgatctacctgaataggaggcgtgtcaaactcatgatgatgccgatgtaagg |
33325359 |
T |
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| Q |
216 |
atgaagaatgtgtgagtttgcgtgaattcaacatagttcgatcgtgacacggaaactcacttggatccaagttctctccacgcgccaacttagcccatgc |
315 |
Q |
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| T |
33325358 |
atgaagaatgtgtgagtttgcgtgaattcaacatagttcgatcgtgacacggaaactcacttggatccaaattctctccacgcgccaacttagcccatgc |
33325259 |
T |
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| Q |
316 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggccacacctaatgtaaaaccgccgcaatggaaccttataagttgccctgcc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| ||||| |
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| T |
33325258 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggcaacacctaatgtaaaaccgccacaattgaaccttgtaagttgcactgcc |
33325159 |
T |
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| Q |
416 |
aataagggaatatcttca |
433 |
Q |
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| T |
33325158 |
aataagggaatatcttca |
33325141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 33339196 - 33339613
Alignment:
| Q |
16 |
aaaagttgagtaaggttttgtcctagggacatctttggaggtgggttgaaaactcacgcgagagttaacatttttcttaagtattgaaacttgttctcgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
33339196 |
aaaagttgagtaaggttttgtcctagggacatctttggaggtgggttgaaaactcatgcgagagttaacatttttcttaagtattgaaacttgttcttgt |
33339295 |
T |
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| Q |
116 |
gtgagttttaaaatagcaacactcacttctctagtgttgcccaaatcatgatctacctgaataggaggcatgtcaaactcatgatgatgccgatgtaagg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33339296 |
gtgagttttaaaatagcaacactcacttctctagtgttgcccacatcacgacctacctgaataggaggcatgtcaaactcatgatgatgtcgatgtaagg |
33339395 |
T |
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| Q |
216 |
atgaagaatgtgtgagtttgcgtgaattcaacatagttcgatcgtgacacggaaactcacttggatccaagttctctccacgcgccaacttagcccatgc |
315 |
Q |
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||| ||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| || |
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| T |
33339396 |
atggagaatgtatgagtttgtatgaattcaacacggttcgatcgtgacacggaaattcacttgaatccaaattctctccacgcgccaacttagcccacgc |
33339495 |
T |
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| Q |
316 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggccacacctaatgtaaaaccgccgcaatggaaccttataagttgccctgcc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||| ||||| |
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| T |
33339496 |
gttcatgaaacacatggttgcggttccatcagttgcggctcgacataaggcaacacctaatgtaaaaccgccacaattgaaccttgtaagttgcactgcc |
33339595 |
T |
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| Q |
416 |
aataagggaatatcttca |
433 |
Q |
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|||||||||||||||||| |
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| T |
33339596 |
aataagggaatatcttca |
33339613 |
T |
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