View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15879_low_7 (Length: 246)
Name: NF15879_low_7
Description: NF15879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15879_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 31132442 - 31132663
Alignment:
| Q |
14 |
ttatacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaaga---ggttggttgctggcattatgagg |
110 |
Q |
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| T |
31132442 |
ttatacttatccgatttttcaagctgggccgagggtgtgtttagggaaagaaatggcgttcttagaaatgaagatcaggttggttgttggcattataagg |
31132541 |
T |
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| Q |
111 |
gagtttagggtgcttccagcgatggatgaaggggttgaaccagtgtttgattcacaccttacttcaattatgaaaggtggctttccggtaaagatcaaga |
210 |
Q |
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| T |
31132542 |
gagtttaggttgcttccagcgatggatgaaggggttgaaccagtgtttgattcacatcttacttcaattatgaaaggtggctttccggtaaagatcaaga |
31132641 |
T |
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| Q |
211 |
agcgcatc-tacacacatgaat |
231 |
Q |
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| T |
31132642 |
agcgcatcttacacacatgaat |
31132663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 31127734 - 31127934
Alignment:
| Q |
14 |
ttatacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctggcattatgagggag |
113 |
Q |
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| T |
31127734 |
ttatagttatgcggtttttcaggctgggccaagggtgtgtttaggaaaggaaatggcgttcttgcagatgaaaagggtggttgccgggatcatgaggcag |
31127833 |
T |
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| Q |
114 |
tttagggtgcttccagcgatggatgaaggggttgaaccagtgtttgattcacaccttacttcaattatgaaaggtggctttccggtaaagatcaagaagc |
213 |
Q |
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| T |
31127834 |
tttagggtggttcctgcaatggataaaggggttgagccggagttcgctgcacaccttacttcgataatgaaaggtggcttcctggtaaagattgagaagc |
31127933 |
T |
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| Q |
214 |
g |
214 |
Q |
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| T |
31127934 |
g |
31127934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 31078416 - 31078595
Alignment:
| Q |
14 |
ttatacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctggcattatgagggag |
113 |
Q |
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| T |
31078416 |
ttatagttatgcggtttttcaagctgggccgagggtgtgtttaggaaaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcag |
31078515 |
T |
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| Q |
114 |
tttagggtgcttccagcgatggatgaaggggttgaaccagtgtttgattcacaccttacttcaattatgaaaggtggctt |
193 |
Q |
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| T |
31078516 |
tttagggtggttcctgcaatggataaaggggttgagccggagtacattgcacaccttacctcattgatgaaaggtggctt |
31078595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 38642955 - 38643038
Alignment:
| Q |
17 |
tacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctgg |
100 |
Q |
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| T |
38642955 |
tacttatccggtttttcaggctgggccgaggatttgtttggggaaagaaatggcatttatgcaaatgaaaaggattgttgctgg |
38643038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 38655863 - 38655946
Alignment:
| Q |
17 |
tacttatccggtttttcaagctgggccgagggtgtgtttagagaaagaaatggcgttcttacaaatgaagaggttggttgctgg |
100 |
Q |
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| T |
38655863 |
tacttatccggtttttcaggctgggccgaggatttgtttggggaaagaaatggcatttatgcaaatgaaaaggattgttgctgg |
38655946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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