View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1587_low_1 (Length: 336)
Name: NF1587_low_1
Description: NF1587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1587_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 43091215 - 43091500
Alignment:
| Q |
14 |
tactcacatgaagaagtagggaatgaagaaagtactttgctacaagatgagtatgatgattatgaagaagaagaaactttatcactttgtgaccttccaa |
113 |
Q |
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| T |
43091215 |
tactcacatcaagaagtagggaatgaagaaagtactttgctacaagatgagtatgatgattatgaagaagaagaaactttatcactttgtgaccttccaa |
43091314 |
T |
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| Q |
114 |
attccacaatttcacctcaacgaggtgatttttccaattatggcaaggatcaccnnnnnnnnnnnnnnnnnnnnaacttgtttgagtttttcagtgaaga |
213 |
Q |
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| T |
43091315 |
attccacaatttcacctcaacggggtgatttttccaattatggcaaggatcaccatgatgatgatgatgatgataacttgtttgagtttttcagtgaaga |
43091414 |
T |
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| Q |
214 |
attcaacacttcaacaattcatgacaacataatcttctgtggcaaactcattcccttcaaagatcatcaatatgttcctcataacc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091415 |
attcaacacttcaacaattcatgacaacataatcttctgtggcaaactcattcccttcaaagatcatcaatatgttcctcataacc |
43091500 |
T |
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