View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1587_low_2 (Length: 335)
Name: NF1587_low_2
Description: NF1587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1587_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 8181888 - 8182188
Alignment:
| Q |
12 |
caaaggtggtgtcagaaataagggttttccaacacttacttacagacttgaatcgaagaagagatctaacaggaagaaacaaaagtacctcaaggatgag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8181888 |
caaaggtggtgtcagaaataagggttttccaacacttacttacagacttca-tcgaagaagagatctaacaggaagaaacaaaagtacctcaaggatgag |
8181986 |
T |
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| Q |
112 |
atcgctggagaggatcgaggggactgtcagcgacggagtcattgtcatggcggtgaatggtgatggtaatgacgtgatgaaagttgacggcggcgatggt |
211 |
Q |
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| T |
8181987 |
atcactggagaggatcgaggggactgtcggcgacggagtcgttgtcatggcggtg-------atggtaatgacgtgatgaaagttgacggcggcgatggt |
8182079 |
T |
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| Q |
212 |
ttgttaacggttacgccgctgagttcagcaactcggagccatggatcggcaaaaagggagaagcatataaatgtgtggatgatgattgcggaggagagga |
311 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8182080 |
ttgttaacggttacgctgctgagttcagcgactcggagccatggatcggcaaaaagggagaagcatataaatgtgtggatgatgattgcggaggagagga |
8182179 |
T |
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| Q |
312 |
tctagaaag |
320 |
Q |
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||||||||| |
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| T |
8182180 |
tctagaaag |
8182188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 21897332 - 21897483
Alignment:
| Q |
12 |
caaaggtggtgtcagaaataagggttttccaacacttacttacagacttgaatcgaagaagagatctaacaggaagaaacaaaagtacctcaaggatgag |
111 |
Q |
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||||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||||| || |
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| T |
21897332 |
caaaggtggggtcggaaattagggttttccaacacttacttacagacctgaatcgaataagagatctaacaggaagaaacgaaagtacctcgaggatcag |
21897431 |
T |
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| Q |
112 |
atcgctggagaggatcgaggggactgtcagcgacggagtcattgtcatggcg |
163 |
Q |
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| T |
21897432 |
atcgttagagaggatcgaggggactgccggcgacagattcattgtgatggcg |
21897483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 4015750 - 4015849
Alignment:
| Q |
12 |
caaaggtggtgtcagaaataagggttttccaacacttacttacagacttgaatcgaagaagagatctaacaggaagaaacaaaagtacctcaaggatgag |
111 |
Q |
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||||||||| || ||||| |||||||||||| ||||||| ||| || ||||||||| ||||||||| || |||||||| |||||||||||| |||||| |
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| T |
4015750 |
caaaggtggaatcggaaattagggttttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagtacctcaaagatgag |
4015849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 4367381 - 4367461
Alignment:
| Q |
23 |
tcagaaataagggttttccaacacttacttacagacttgaatcgaagaagagatctaacaggaagaaacaaaagtacctca |
103 |
Q |
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| T |
4367381 |
tcagagatgaggtttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctca |
4367461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 4017579 - 4017670
Alignment:
| Q |
23 |
tcagaaataagggttttccaacacttacttacagacttgaatcgaagaagagatctaacaggaagaaacaaaagtacctcaaggatgagatc |
114 |
Q |
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|||||||| |||||||||||| | ||||| ||| || | ||| | ||||||||| | || ||||||||| |||||||||| | ||||||||| |
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| T |
4017579 |
tcagaaattagggttttccaagatttactcacacacctaaattggagaagagatttcacgggaagaaacgaaagtacctcgacgatgagatc |
4017670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 17834256 - 17834141
Alignment:
| Q |
94 |
aagtacctcaaggatgagatcgctggagaggatcgaggggactgtcagcgacggagtcattgtcatggcggtgaatggtgatggtaatgacgtgatgaaa |
193 |
Q |
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|||||||| |||||||||||||||| ||||||| |||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17834256 |
aagtacctaaaggatgagatcgctgaagaggattgaggggactgccggcaacggagtcattgtcatggcg-------gtgatggtaatgacgtgatgaaa |
17834164 |
T |
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| Q |
194 |
gttgacggcggcgatggtttgtt |
216 |
Q |
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||||||| ||||||||||||||| |
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| T |
17834163 |
gttgacgacggcgatggtttgtt |
17834141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 31111756 - 31111837
Alignment:
| Q |
32 |
agggttttccaacacttacttacagacttgaatcgaagaagagatctaacaggaagaaacaaaagtacctcaaggatgagat |
113 |
Q |
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||||||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
31111756 |
agggttttccaacacttacgtacaaacctgaatcgaagaagagatctaacatgaagaaacaaaagtacctaaaggatgagat |
31111837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 31111845 - 31111886
Alignment:
| Q |
170 |
ggtgatggtaatgacgtgatgaaagttgacggcggcgatggt |
211 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
31111845 |
ggtgacggtaatggcgtgatgaaagttgacggcggcgatggt |
31111886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 31111881 - 31111929
Alignment:
| Q |
173 |
gatggtaatgacgtgatgaaagttgacggcggcgatggtttgttaacggt |
222 |
Q |
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||||||||||||||||||||||||||| || | |||||||||||||||| |
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| T |
31111881 |
gatggtaatgacgtgatgaaagttgacagc-gatatggtttgttaacggt |
31111929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 34189149 - 34189091
Alignment:
| Q |
262 |
aaaaagggagaagcatataaatgtgtggatgatgattgcggaggagaggatctagaaag |
320 |
Q |
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||||||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| |
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| T |
34189149 |
aaaaaggtagaagcatataaatgtgtagatgatgataacggatgagaggatctagaaag |
34189091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 34189418 - 34189377
Alignment:
| Q |
181 |
tgacgtgatgaaagttgacggcggcgatggtttgttaacggt |
222 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34189418 |
tgacatgatgaaagttgacggcggcgatggtttgttaacggt |
34189377 |
T |
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