View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15880_high_4 (Length: 315)
Name: NF15880_high_4
Description: NF15880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15880_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 301
Target Start/End: Complemental strand, 41986587 - 41986303
Alignment:
| Q |
17 |
acaatgatcttgatctcattcgtttccgatcagtttgttggacgtggcggagctcttccatctcaaatcaccaccgtcctaatttagtgcccttcaagat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41986587 |
acaatgatcttgatctcattcgtttccgatcagtttgttcgacgtggcggtgctcttccatctcaaatcaccaccgtcctaatttagtgcccttcaagat |
41986488 |
T |
|
| Q |
117 |
aaaacattttgagtttcactgtccatcatcatcctatttcctctcaaaacacagtctcttactcatcaaaccaccaacgcaacaacaaaatctccgtccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
41986487 |
aaaacattttgagtttcactgtccatcatcatcctatttcctctcaaaacacagtctcttactcatcaaaccaccaccacaacaacaaaatctccgtccc |
41986388 |
T |
|
| Q |
217 |
tggttgattagaattacccaaaattcatgtggcgaaacacaactcttccatcccctccgcccatgtgagtatccttgcccctatg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
41986387 |
tggttgattagaattacccaaaattcatgtggggaaacacaactcttccatccactccgcccatgtgagtatccttgcccttatg |
41986303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 9417403 - 9417336
Alignment:
| Q |
20 |
atgatcttgatctcattcgtttccgatcagtttgttggacgtggcggagctcttccatctcaaatcac |
87 |
Q |
| |
|
|||| ||||||||||||| ||| ||||| ||||||| | ||||||| |||||||||| ||||||||| |
|
|
| T |
9417403 |
atgaacttgatctcattcattttcgatcggtttgttcaaagtggcggcgctcttccatttcaaatcac |
9417336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 41981742 - 41981700
Alignment:
| Q |
49 |
gtttgttggacgtggcggagctcttccatctcaaatcaccacc |
91 |
Q |
| |
|
||||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
41981742 |
gtttgttcgacgtggcggagttctcccatctcaaatcaccacc |
41981700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 9408212 - 9408151
Alignment:
| Q |
28 |
gatctcattcgtttccgatcagtttgttggacgtggcggagctcttccatctcaaatcacca |
89 |
Q |
| |
|
|||||||||| ||| ||||| ||||||| ||||||||| ||| |||||| ||||||||||| |
|
|
| T |
9408212 |
gatctcattcattttcgatcggtttgttcaacgtggcggcgctgttccatttcaaatcacca |
9408151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 44688182 - 44688249
Alignment:
| Q |
208 |
ctccgtccctggttgattagaattacccaaaattcatgtggcgaaacacaactcttccatcccctccg |
275 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||| | || ||||||||||||||||| || ||||| |
|
|
| T |
44688182 |
ctccgtccttggttgattagaattaccaaaaactcacgcggagaaacacaactcttccacccactccg |
44688249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University