View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15880_low_1 (Length: 567)
Name: NF15880_low_1
Description: NF15880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15880_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 185 - 552
Target Start/End: Original strand, 3753085 - 3753452
Alignment:
| Q |
185 |
ccatgttatctcatcctatagtgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgct |
284 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3753085 |
ccatgttatctcatcatatagtgatcttggtgtgactcttgacattccctcttcaaatctaagattctttttagttagaggaagcccttttataactgct |
3753184 |
T |
|
| Q |
285 |
tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753185 |
tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta |
3753284 |
T |
|
| Q |
385 |
ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtat |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3753285 |
ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccattttccggtataatccgtat |
3753384 |
T |
|
| Q |
485 |
catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
552 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3753385 |
catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
3753452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 185 - 552
Target Start/End: Complemental strand, 4047153 - 4046786
Alignment:
| Q |
185 |
ccatgttatctcatcctatagtgatcttggtgtgactctcgacattccctcttcaaatctaagattctttttagttagaggaagcccttttgtaactgct |
284 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| |
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| T |
4047153 |
ccatgttatttcatcttatagtgatcttggtgtgactcttgatattccctcttcaaacctaagattctttttggttagaggaagcccttttttaactgct |
4047054 |
T |
|
| Q |
285 |
tcagttacaaaaccaacctcactttcaatcacaacacttcataacatagtttctttgtcttctttcgacgacaaaaacaccaaacatacccttcaactta |
384 |
Q |
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|||||||||||||||| | ||||||||||||||| |||||| ||| ||||||||||| | || || | ||||| |||||| ||||||||||||| | |
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| T |
4047053 |
tcagttacaaaaccaatacctctttcaatcacaacaattcatagtataatttctttgtctccatttgataagaaaaaaaccaaatatacccttcaactca |
4046954 |
T |
|
| Q |
385 |
ataacactcagaaatggatcatatacacttcttcaccaataaaattcaaccatgatggttctgagattgtatccaatccatttaccggtataatccgtat |
484 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||| || |||| ||||||| ||||||| || ||||| |
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| T |
4046953 |
ataacaatcagacatggatcatatacacttcttcaccaatcaacttcaaccatgatggttccgaggttaaatccggtccattttccggtattattcgtat |
4046854 |
T |
|
| Q |
485 |
catagtcattcctaataccaaatttgagaaaattcttgataaattcagctcttgttaccctgtctctg |
552 |
Q |
| |
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| || ||||| || |||| ||||||||||||||||||||| ||||||||||||||| |||||| |
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|
| T |
4046853 |
cgcggttgttcctgattccaatggtgagaaaattcttgataaatttagctcttgttaccctatctctg |
4046786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 3752920 - 3753053
Alignment:
| Q |
20 |
tgacacacctgaatacattcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttcttctcttttcagcaacaatgttgtac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3752920 |
tgacacacctgaatacattcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttctcctcttttcagcaacaatgttgtac |
3753019 |
T |
|
| Q |
120 |
caagttttttcaccagatctcacaatttcttcct |
153 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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|
| T |
3753020 |
caagttttttcaccagatctcacaatttcatcct |
3753053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 4047309 - 4047185
Alignment:
| Q |
29 |
tgaatacattcacccttacctcatcaaatcctcaaacttttccctctctatttcctaccctcttcttctcttttcagcaacaatgttgtaccaagttttt |
128 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||| |||||| ||| |||| ||||||||||| ||||||||| || |||||||||||||||||||| |
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|
| T |
4047309 |
tgaatacattcacccttaccttgtcaaatcctcaaactcttccctatctgtttcataccctcttctcctcttttcaacagcaatgttgtaccaagttttt |
4047210 |
T |
|
| Q |
129 |
tcaccagatctcacaatttcttcct |
153 |
Q |
| |
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||||||||||| ||||| ||||||| |
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| T |
4047209 |
tcaccagatcttacaatatcttcct |
4047185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 6458462 - 6458406
Alignment:
| Q |
20 |
tgacacacctgaatacattcacccttacctcatcaaatcctcaaacttttccctctc |
76 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6458462 |
tgacacacctgagtacattcacccttacctcatcaaatcctcaaacttctccctctc |
6458406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 6472138 - 6472178
Alignment:
| Q |
26 |
acctgaatacattcacccttacctcatcaaatcctcaaact |
66 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
6472138 |
acctgaatacattcatccttacctcatcaaatcatcaaact |
6472178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 6506567 - 6506526
Alignment:
| Q |
25 |
cacctgaatacattcacccttacctcatcaaatcctcaaact |
66 |
Q |
| |
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||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
6506567 |
cacctgaatactttcatccttacctcatcaaatcatcaaact |
6506526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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