View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15880_low_2 (Length: 391)

Name: NF15880_low_2
Description: NF15880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15880_low_2
NF15880_low_2
[»] chr4 (10 HSPs)
chr4 (227-354)||(22638355-22638483)
chr4 (291-366)||(23978744-23978819)
chr4 (291-369)||(16861338-16861415)
chr4 (291-369)||(23098931-23099009)
chr4 (6-52)||(38899389-38899435)
chr4 (227-350)||(43454325-43454445)
chr4 (13-60)||(7282096-7282143)
chr4 (16-60)||(6254348-6254392)
chr4 (12-52)||(14043031-14043071)
chr4 (16-60)||(14044934-14044978)
[»] scaffold0003 (1 HSPs)
scaffold0003 (247-361)||(218749-218865)
[»] chr1 (4 HSPs)
chr1 (293-369)||(24231558-24231634)
chr1 (291-369)||(50960106-50960184)
chr1 (236-345)||(44825819-44825930)
chr1 (14-60)||(3368091-3368137)
[»] chr3 (4 HSPs)
chr3 (227-382)||(3269980-3270140)
chr3 (313-366)||(37437778-37437831)
chr3 (13-60)||(24398091-24398138)
chr3 (15-50)||(53359259-53359294)
[»] chr8 (2 HSPs)
chr8 (251-369)||(26657991-26658112)
chr8 (10-60)||(22721092-22721142)
[»] chr5 (5 HSPs)
chr5 (8-60)||(17344858-17344910)
chr5 (236-366)||(28074607-28074739)
chr5 (8-52)||(26505584-26505628)
chr5 (8-52)||(16109180-16109224)
chr5 (16-52)||(22553374-22553410)
[»] chr6 (6 HSPs)
chr6 (12-60)||(11182092-11182140)
chr6 (307-381)||(6420672-6420746)
chr6 (236-325)||(25054811-25054901)
chr6 (12-52)||(12404805-12404845)
chr6 (13-49)||(2637757-2637793)
chr6 (12-52)||(14283347-14283387)
[»] chr7 (2 HSPs)
chr7 (13-52)||(12168221-12168260)
chr7 (10-52)||(15826639-15826681)
[»] scaffold0103 (1 HSPs)
scaffold0103 (13-49)||(2216-2252)
[»] chr2 (2 HSPs)
chr2 (16-52)||(33077506-33077542)
chr2 (12-52)||(33078423-33078463)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 227 - 354
Target Start/End: Original strand, 22638355 - 22638483
Alignment:
Q  227 tataatttatttttaaggagt-aatttatacgtcttttgtctatttattcgttatacnnnnnnnaggtaaccacgatataagttcataaattccaccatc 325  Q
    ||||| || |||||||||||| |||||||| |||||||||||||||||||||||||         ||||| || |||||| ||||| |||||||||||||    
T  22638355 tataaattttttttaaggagttaatttatatgtcttttgtctatttattcgttatattttttttgggtaatcatgatatatgttcacaaattccaccatc 22638454  T
Q  326 gttagagatgactaatctccgtcaaaaat 354  Q
    |||||||||||||||||||||||||||||    
T  22638455 gttagagatgactaatctccgtcaaaaat 22638483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 366
Target Start/End: Complemental strand, 23978819 - 23978744
Alignment:
Q  291 ggtaaccacgatataagttcataaattccaccatcgttagagatgactaatctccgtcaaaaattggtggggcaca 366  Q
    |||||||| |||||| ||||| |||||||||||| |||||||||||||||||||| |||  |||  ||||||||||    
T  23978819 ggtaaccatgatataggttcacaaattccaccattgttagagatgactaatctccatcaggaatcagtggggcaca 23978744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 16861415 - 16861338
Alignment:
Q  291 ggtaaccacgatataagttcataaattccaccatcgttagagatgactaatctccgtcaaaaattggtggggcacaaaa 369  Q
    |||||||| |||||| ||||| ||||||||| ||| |||||| ||||||||||||||||| ||| |||| |||||||||    
T  16861415 ggtaaccatgatataggttcacaaattccacaatc-ttagaggtgactaatctccgtcaagaatcggtgaggcacaaaa 16861338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 23098931 - 23099009
Alignment:
Q  291 ggtaaccacgatataagttcataaattccaccatcgttagagatgactaatctccgtcaaaaattggtggggcacaaaa 369  Q
    |||||||| |||||| ||| | ||||||||||||| ||| || ||||||||||||||||| |||  ||| |||||||||    
T  23098931 ggtaaccatgatataggttaaaaaattccaccatcattataggtgactaatctccgtcaagaatcagtgaggcacaaaa 23099009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 38899435 - 38899389
Alignment:
Q  6 aattttgtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||||||    
T  38899435 aattttgtctttttagttgggagcgagcaatttctgtttggtaaaga 38899389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 350
Target Start/End: Complemental strand, 43454445 - 43454325
Alignment:
Q  227 tataatttatttttaaggagt-aatttatacgtcttttgtctatttattcgttatacnnnnnnnaggtaaccacgatataagttcataaattccaccatc 325  Q
    |||||||| |||||||||||| |||||||| || |||||||||||||||    ||||        | |||||| |||||| ||||| ||||| |||||||    
T  43454445 tataatttttttttaaggagttaatttatatgtattttgtctatttatt----atacttttttttgttaaccatgatataggttcacaaatttcaccatc 43454350  T
Q  326 gttagagatgactaatctccgtcaa 350  Q
    ||||||||||| |||||||| ||||    
T  43454349 gttagagatgattaatctccatcaa 43454325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 7282096 - 7282143
Alignment:
Q  13 tcttttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    ||||||||||| |||||||||||||| |||||| |||||| |||||||    
T  7282096 tcttttcagtttggagcgagcaatttatgttagataaagagcataatt 7282143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 6254392 - 6254348
Alignment:
Q  16 tttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    ||||||||||||||||||||||| |||| || ||||| |||||||    
T  6254392 tttcagttgggagcgagcaatttatgttgggcaaagagcataatt 6254348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 14043071 - 14043031
Alignment:
Q  12 gtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||||||||||||||||||||||||| |||| | ||||||    
T  14043071 gtcttttcagttgggagcgagcaatttctgttggataaaga 14043031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 14044934 - 14044978
Alignment:
Q  16 tttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    ||||||||||||||||||| ||||| || ||||||||||| ||||    
T  14044934 tttcagttgggagcgagcattttttatttggtaaagaacagaatt 14044978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 361
Target Start/End: Original strand, 218749 - 218865
Alignment:
Q  247 taatttatacgtcttttgtctatttattcgttatacnnnnnnna--ggtaaccacgatataagttcataaattccaccatcgttagagatgactaatctc 344  Q
    ||||||||| ||||||||||||||||||||||||||          |||||||| |||||| ||||| |||||| || | ||||||||||||||||||||    
T  218749 taatttatatgtcttttgtctatttattcgttatacaattcttttgggtaaccatgatataggttcacaaattctactaacgttagagatgactaatctc 218848  T
Q  345 cgtcaaaaattggtggg 361  Q
    |||||||||||||||||    
T  218849 cgtcaaaaattggtggg 218865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 24231558 - 24231634
Alignment:
Q  293 taaccacgatataagttcataaattccaccatcgttagagatgactaatctccgtcaaaaattggtggggcacaaaa 369  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||    
T  24231558 taaccatgatataggttcacaaattccaccatcgttagagatgactaatctccgtcagaaatcggtcgggcaaaaaa 24231634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 369
Target Start/End: Complemental strand, 50960184 - 50960106
Alignment:
Q  291 ggtaaccacgatataagttcataaattccaccatcgttagagatgactaatctccgtcaaaaattggtggggcacaaaa 369  Q
    |||||||| |||||| ||||| |||||  |||||| |||||||| | ||||||||||||||||| ||||||||||||||    
T  50960184 ggtaaccatgatataggttcacaaattttaccatcattagagataaataatctccgtcaaaaatcggtggggcacaaaa 50960106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 44825819 - 44825930
Alignment:
Q  236 tttttaaggagt-aatttatacgtcttttgtctatttattcgttatacnnnnnnnagg-taaccacgatataagttcataaattccaccatcgttagaga 333  Q
    |||||||||||| || ||||| || |||||||||||||||||||||||        || |||||| |||||| ||||| |||||||||||||| || |||    
T  44825819 tttttaaggagttaaattatatgtattttgtctatttattcgttatacttttttttgggtaaccatgatataggttcacaaattccaccatcgctaaaga 44825918  T
Q  334 tgactaatctcc 345  Q
    ||||||||||||    
T  44825919 tgactaatctcc 44825930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 3368137 - 3368091
Alignment:
Q  14 cttttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    ||||||||||||||||||||||||| |||| |||||||| |||||||    
T  3368137 cttttcagttgggagcgagcaatttctgttgggtaaagagcataatt 3368091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 227 - 382
Target Start/End: Original strand, 3269980 - 3270140
Alignment:
Q  227 tataatttatttttaaggagtaatttatacgtctttt--gtctatttattcgttatacnnnnnnna---ggtaaccacgatataagttcataaattccac 321  Q
    ||||||||||||||||||||||||||||| || ||||  ||||||||||| |||||||           |||||||| |||||||||||| ||||| |||    
T  3269980 tataatttatttttaaggagtaatttatatgttttttttgtctatttatttgttataccttttttttggggtaaccatgatataagttcacaaatttcac 3270079  T
Q  322 catcgttagagatgactaatctccgtcaaaaattggtggggcacaaaaagttggttcttct 382  Q
    |||||||||| ||||||||||| | | |  ||  |||||||||||||| || |||||||||    
T  3270080 catcgttagaaatgactaatcttcattaggaaacggtggggcacaaaaggtgggttcttct 3270140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 37437778 - 37437831
Alignment:
Q  313 aaattccaccatcgttagagatgactaatctccgtcaaaaattggtggggcaca 366  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  37437778 aaattccaccatcgttagagatgactaatctccatcagaaattggtggggcaca 37437831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 24398138 - 24398091
Alignment:
Q  13 tcttttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    |||||||||||||||||||||||||| |||| |||||||| |||||||    
T  24398138 tcttttcagttgggagcgagcaatttatgttgggtaaagagcataatt 24398091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 53359259 - 53359294
Alignment:
Q  15 ttttcagttgggagcgagcaatttttgttaggtaaa 50  Q
    ||||||||||||||||||||||||||||| ||||||    
T  53359259 ttttcagttgggagcgagcaatttttgttgggtaaa 53359294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 369
Target Start/End: Original strand, 26657991 - 26658112
Alignment:
Q  251 ttatacgtcttttgtctatttattcgttatacnnnnnnnag---gtaaccacgatataagttcataaattccaccatcgttagagatgactaatctccgt 347  Q
    ||||||||||||||||||||||||||||||||            ||||||| |||||| ||||| ||||| |||||| ||||||||||||||||||| ||    
T  26657991 ttatacgtcttttgtctatttattcgttatacttttttttttttgtaaccatgatataggttcacaaatttcaccatagttagagatgactaatctctgt 26658090  T
Q  348 caaaaattggtggggcacaaaa 369  Q
    ||  ||| ||||||||||||||    
T  26658091 caggaatcggtggggcacaaaa 26658112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 22721142 - 22721092
Alignment:
Q  10 ttgtcttttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    ||||| ||||||||||||| |||||||||||||| |||||||| |||||||    
T  22721142 ttgtcatttcagttgggagggagcaatttttgttgggtaaagagcataatt 22721092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 17344858 - 17344910
Alignment:
Q  8 ttttgtcttttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  17344858 ttttgtcttttcagttgggagcgagcaatttttattgggtaaagagcataatt 17344910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 366
Target Start/End: Original strand, 28074607 - 28074739
Alignment:
Q  236 tttttaaggagt-aatttatacgtcttttgtctatttattc-gttatacnnnnnnnaggtaaccacgatataagttcataaattccaccatcgttagaga 333  Q
    |||||||||||| |||||||| ||||||||| ||||||||  |||||||        |||||||| |||||| ||||| ||||||||| |||||||||||    
T  28074607 tttttaaggagttaatttatatgtcttttgtttatttattttgttatactttttttgggtaaccatgatataggttcacaaattccactatcgttagaga 28074706  T
Q  334 tgactaatctccgtcaaaaattggtggggcaca 366  Q
    | |||||| ||| |||  ||| |||||||||||    
T  28074707 taactaatatccatcaggaatcggtggggcaca 28074739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 26505628 - 26505584
Alignment:
Q  8 ttttgtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    |||||||||||||||||||||| | ||||||||||| ||||||||    
T  26505628 ttttgtcttttcagttgggagcaaacaatttttgttgggtaaaga 26505584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 16109224 - 16109180
Alignment:
Q  8 ttttgtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||||||||||||||||||| ||||||| | |||| ||||||||    
T  16109224 ttttgtcttttcagttgggagagagcaatatatgttgggtaaaga 16109180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 22553374 - 22553410
Alignment:
Q  16 tttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  22553374 tttcagttgggagcgggcaatttttgttgggtaaaga 22553410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 11182092 - 11182140
Alignment:
Q  12 gtcttttcagttgggagcgagcaatttttgttaggtaaagaacataatt 60  Q
    |||||||||||||||||||| ||||||||||| |||||||| |||||||    
T  11182092 gtcttttcagttgggagcgaacaatttttgttgggtaaagagcataatt 11182140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 6420746 - 6420672
Alignment:
Q  307 gttcataaattccaccatcgttagagatgactaatctccgtcaaaaattggtggggcacaaaaagttggttcttc 381  Q
    ||||| |||||||| |||||||| | |||||||||||| ||||| ||| || ||||||||||| || ||||||||    
T  6420746 gttcacaaattccatcatcgttaaaaatgactaatctctgtcaagaatcggcggggcacaaaaggtgggttcttc 6420672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 25054901 - 25054811
Alignment:
Q  236 tttttaaggagt-aatttatacgtcttttgtctatttattcgttatacnnnnnnnaggtaaccacgatataagttcataaattccaccatc 325  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||        ||| |||| |||||| ||||| |||||||||||||    
T  25054901 tttttaaggagttaatttatatgtcttttgtttatttattcgttatactttctttgggtgaccatgatataggttcacaaattccaccatc 25054811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 12404845 - 12404805
Alignment:
Q  12 gtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  12404845 gtcttttctgttgggagcgagcaatttttgttgggtaaaga 12404805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 2637757 - 2637793
Alignment:
Q  13 tcttttcagttgggagcgagcaatttttgttaggtaa 49  Q
    |||||||| |||||||||||||||||||||| |||||    
T  2637757 tcttttcaattgggagcgagcaatttttgttgggtaa 2637793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 14283387 - 14283347
Alignment:
Q  12 gtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||||||||||||||||||||||||| ||||  |||||||    
T  14283387 gtcttttcagttgggagcgagcaatttctgttgagtaaaga 14283347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 12168260 - 12168221
Alignment:
Q  13 tcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  12168260 tcttttcagttgggagcgagcaattgttgttgggtaaaga 12168221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 15826639 - 15826681
Alignment:
Q  10 ttgtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||    
T  15826639 ttgtcatttcagttgggagcgagcaatttctgttgggtaaaga 15826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 2252 - 2216
Alignment:
Q  13 tcttttcagttgggagcgagcaatttttgttaggtaa 49  Q
    |||||||| |||||||||||||||||||||| |||||    
T  2252 tcttttcaattgggagcgagcaatttttgttgggtaa 2216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 33077542 - 33077506
Alignment:
Q  16 tttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  33077542 tttcagttgagagcgagcaatttttgttgggtaaaga 33077506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 33078423 - 33078463
Alignment:
Q  12 gtcttttcagttgggagcgagcaatttttgttaggtaaaga 52  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  33078423 gtcttttcagttgggagcggacaatttctgttaggtaaaga 33078463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University