View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15880_low_3 (Length: 331)

Name: NF15880_low_3
Description: NF15880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15880_low_3
NF15880_low_3
[»] chr5 (1 HSPs)
chr5 (4-315)||(37975084-37975396)
[»] chr4 (2 HSPs)
chr4 (47-131)||(19121678-19121763)
chr4 (71-131)||(27843827-27843888)
[»] chr7 (2 HSPs)
chr7 (44-119)||(21255443-21255518)
chr7 (51-99)||(25592662-25592710)
[»] chr3 (1 HSPs)
chr3 (70-131)||(31294872-31294934)
[»] scaffold0370 (2 HSPs)
scaffold0370 (67-116)||(8913-8962)
scaffold0370 (67-116)||(14203-14252)
[»] chr2 (1 HSPs)
chr2 (56-131)||(8821706-8821781)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 37975084 - 37975396
Alignment:
Q  4 gtgaaattagctgaatggaggtttaagcatataggcaatattgtttggctactagacaataattacactataaatattttgttcagacattctaattaac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37975084 gtgaaattagctgaatggaggtttaagcatataggcaatattgtttggctactagacaataattacactataaatattttgttcagacattctaattaac 37975183  T
Q  104 atattcaatcaatcaacaagcttattttgcnnnnnnnnnnnnnnnnn-ttatcgcttacatttatgttttatgtaagcatttcttagtgtagtttaaacc 202  Q
    ||||||||||||||||||||||||||| ||                  |||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  37975184 atattcaatcaatcaacaagcttatttcgcaaaaaaaaaaaaaaaaaattatcgcttacatttatgttttatttatgcatttcttagtgtagtttaaacc 37975283  T
Q  203 caaaaaccaccgtacttaacactctactgtagaagttaagcaactcatagttgagggacaacgtttctccctcactgtcaattgcttgaaacaaagagag 302  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  37975284 caaaaaccaccgtacttaacactctattgtagaagttaagcaactcatagttgagggacaatgtttctccttcactgtcaatcgcttgaaacaaagagag 37975383  T
Q  303 tcacaattgaaaa 315  Q
    |||||||||||||    
T  37975384 tcacaattgaaaa 37975396  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 19121763 - 19121678
Alignment:
Q  47 tttggctactagacaataattacactataaatattttgttcagacattctaattaacatattcaatcaatc-aacaagcttatttt 131  Q
    |||||||| |||  |||||| |||||||||||||||||| || ||||| |||||||||||| ||||||||| ||||||||||||||    
T  19121763 tttggctaataggaaataatgacactataaatattttgtgcatacattgtaattaacatatccaatcaatcaaacaagcttatttt 19121678  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 27843827 - 27843888
Alignment:
Q  71 ctataaatattttgttcagacattctaattaacatattcaatcaatc-aacaagcttatttt 131  Q
    ||||||||| | |||||| ||||| ||||||||| |||||||||||| |||||| |||||||    
T  27843827 ctataaatactatgttcatacattgtaattaacacattcaatcaatcaaacaagtttatttt 27843888  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 21255443 - 21255518
Alignment:
Q  44 ttgtttggctactagacaataattacactataaatattttgttcagacattctaattaacatattcaatcaatcaa 119  Q
    ||||||| ||| ||||||||| ||||| |||||||||| | |||| ||||| ||||||||  | ||||||||||||    
T  21255443 ttgtttgtctaatagacaatagttacattataaatattatattcatacattgtaattaacgcactcaatcaatcaa 21255518  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 25592662 - 25592710
Alignment:
Q  51 gctactagacaataattacactataaatattttgttcagacattctaat 99  Q
    |||| ||||||||| |||||||||||||| |||||||| ||||| ||||    
T  25592662 gctagtagacaatagttacactataaatactttgttcatacattgtaat 25592710  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 31294872 - 31294934
Alignment:
Q  70 actataaatattttgttcagacattctaattaacatattcaatcaatc-aacaagcttatttt 131  Q
    |||||||||||||| |||| ||||| ||| ||||| || ||||||||| ||||||||||||||    
T  31294872 actataaatattttattcatacattttaaataacacatacaatcaatcaaacaagcttatttt 31294934  T

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Target: scaffold0370 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 8962 - 8913
Alignment:
Q  67 tacactataaatattttgttcagacattctaattaacatattcaatcaat 116  Q
    ||||||||||||| |||||||| ||||| ||||||||| || ||||||||    
T  8962 tacactataaatagtttgttcatacattgtaattaacacatccaatcaat 8913  T

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Target: scaffold0370; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 14252 - 14203
Alignment:
Q  67 tacactataaatattttgttcagacattctaattaacatattcaatcaat 116  Q
    ||||||||||||| |||||||| ||||| ||||||||| || ||||||||    
T  14252 tacactataaatagtttgttcatacattgtaattaacacatccaatcaat 14203  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 8821781 - 8821706
Alignment:
Q  56 tagacaataattacactataaatattttgttcagacattctaattaacatattcaatcaatc-aacaagcttatttt 131  Q
    ||||||||| |||||||||||||||| |||| | | ||| ||||| ||| || ||||||||| ||||||||||||||    
T  8821781 tagacaatagttacactataaatattatgttgata-attgtaatttacacatccaatcaatcaaacaagcttatttt 8821706  T

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