View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15882_high_1 (Length: 465)
Name: NF15882_high_1
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15882_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 43983703 - 43984147
Alignment:
| Q |
18 |
aaggggtggtatctgcacacgcgctctcagacccaagtcatgtgggaaactgccacatcattgctcaattgtaatgtgcaaaatggctatatgggtctgt |
117 |
Q |
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| T |
43983703 |
aaggggtggtatctgcacacgcgctctcagacccaagtaatgtgggaaactaccacatcattgctcaattgtaatgtgcaaaatggctatatgggtctgt |
43983802 |
T |
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| Q |
118 |
tacaaagcttttgggaagaggaatgacaaataagatgaacataaaagttnnnnnnntacaatccttcaattgatccaaaataaaatgacttttattaaac |
217 |
Q |
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| T |
43983803 |
tacaaagcttttgggaagaggaatgacaaataagatgaacataaaagttaaaaaaatacaatccttcaattgatccaaaataaaatgacttttattaaac |
43983902 |
T |
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| Q |
218 |
ataaacaatgccaaatacaaaagtataattaatccaagtaataagagatttgagctccttaaacctaaggttcagagtttaattattgactctcacatat |
317 |
Q |
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| T |
43983903 |
ataaacaatgccaaatacaaaagtataattgatccaagtaataagagatttaagctccttaaacataaggttcagagtttaattattgactctcacatat |
43984002 |
T |
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| Q |
318 |
ttcccaacgaaattaattactgctaagcggtgaaaatttcttaccaatatcgtgctaaaccaaaaaagatgtagcaaaatcagacacggcatcttatgca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984003 |
ttcccaacgaaattaattactgctaagcggtgaaaatttcgtaccaatatcgtgctaaaccaaaaaagatgtagcaaaatcagacacggcatcttatgca |
43984102 |
T |
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| Q |
418 |
gatatcactcaattctcttggactcctactcttctctgctcctcc |
462 |
Q |
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| T |
43984103 |
gatatcactcaattctcttggactcctactcttctcttctcctcc |
43984147 |
T |
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