View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15882_high_3 (Length: 417)
Name: NF15882_high_3
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15882_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 45 - 382
Target Start/End: Original strand, 13590051 - 13590388
Alignment:
| Q |
45 |
agaaaagaaaatacatataatattttctttgcattttttggataaatatgtatttatgtatgtttctagaacttgctattcgatatgtttctttttctgt |
144 |
Q |
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| T |
13590051 |
agaaaagaaaatacatttaatctcttctttgcaatttttggataaatatgcatttatgtatgtttctagaacttgctattcgatatgtttctttctctgt |
13590150 |
T |
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| Q |
145 |
ccctatatcatctgccacctctattattatctttccnnnnnnnnaatgccatttatatcacacaaaaaccttctttctctttcctcaactttctagtcct |
244 |
Q |
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| T |
13590151 |
ccctatatcatctgccacctctattattatctttccttttttttaatgccatttatatcacacaaaaaccttctttctctttcctcaactttctagtcct |
13590250 |
T |
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| Q |
245 |
ctctcatttcattgactcttctcttacaatccatccacaaagttcatccnnnnnnnctcaaaaccaatcccccttttatcataaagaattcaatttatga |
344 |
Q |
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| T |
13590251 |
ctctcatttcattgactcttctcttacaatccatccacaaagttcatccaaaaaaactcaaaaccaatcccccttttatcataaagaattcaatttatga |
13590350 |
T |
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| Q |
345 |
taaagaattgaattttgtttctacacatcaaatataag |
382 |
Q |
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| T |
13590351 |
taaagaattgaattttgtttctacacatcaaatataag |
13590388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 13589913 - 13589942
Alignment:
| Q |
18 |
taaacactccctccaaccttattaattaga |
47 |
Q |
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| T |
13589913 |
taaacactccctccaaccttattaattaga |
13589942 |
T |
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