View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15882_low_10 (Length: 374)
Name: NF15882_low_10
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15882_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 34825777 - 34825517
Alignment:
| Q |
19 |
atggtctctatcaacagttggagtgtgagccaactttacaaattgggtatgcactttttctaggctcaatcattgatcatgcttgataatgttttggtca |
118 |
Q |
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| T |
34825777 |
atggtctctatcaacagttggagtgtgagccaactttacaaattgggtatgcactttttctaggctcaatcattgatcatggttgataatgttttggtca |
34825678 |
T |
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| Q |
119 |
cactcacatctactatgt-----------------gtatttcttttaggcattattgatatcttaggaatagcatgtgtgctgcaaatatgattagtact |
201 |
Q |
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| T |
34825677 |
cactcacatctactatgttgcaaacatcatgatgtgtatttcttttaggcattattgatatcttaggaatagcatgtgtgctgcaaatatgattagtact |
34825578 |
T |
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| Q |
202 |
attgttgcttgacatgcaagcttaaatgacaactgaattctaacataagcaatttcaaata |
262 |
Q |
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| T |
34825577 |
attgttgcttgacatgcaagcttaaatgacaactgaattctaacataagcaatttcaaata |
34825517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 34825275 - 34825171
Alignment:
| Q |
258 |
aaatatctccacaaaaacatgtggtgtgatctgacctgatgcatgtgtaaaaaacaatcatacaatcggtgtatacaaattaaatctatattattatttt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34825275 |
aaatatctccacaaaaacatgtggtgtgatctgacctgatgcatgtgtaaaaaacaatcatacaatcggtgtatacaaattaaatctatattattatttt |
34825176 |
T |
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| Q |
358 |
cttgg |
362 |
Q |
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|||| |
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| T |
34825175 |
tttgg |
34825171 |
T |
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