View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15882_low_19 (Length: 221)
Name: NF15882_low_19
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15882_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 9880831 - 9880973
Alignment:
| Q |
53 |
ttgagactcaacaaccttaaagaccatattttccgcatctcttcaacggtgttaaattgatgttcaaagaagcctttgccaaggggcacaattttcaaat |
152 |
Q |
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| T |
9880831 |
ttgagattcaacaaccttaaagaccataatttttgcatctctttaactgtgttgaatagaagtgcaaagaatcctttgcaaaggggcacaatattcgaat |
9880930 |
T |
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| Q |
153 |
ttttcaaaattggccatagagaggacaatttcttgtaaagatc |
195 |
Q |
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| T |
9880931 |
ttttcaaatttggccatagagaggacattttcttgtagagatc |
9880973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 23262783 - 23262725
Alignment:
| Q |
53 |
ttgagactcaacaaccttaaagaccatattttccgcatctcttcaacggtgttaaattg |
111 |
Q |
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| T |
23262783 |
ttgagactcaactaccttaaagaccatatttttcgcatctcttcaactgtgttaaattg |
23262725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 23262892 - 23262854
Alignment:
| Q |
17 |
atactcttgcgggaggttcataattcgaatccaaacttg |
55 |
Q |
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| T |
23262892 |
atactcttgcgggaggttcataattcgaatccaaacttg |
23262854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 23262730 - 23262691
Alignment:
| Q |
159 |
aaattggccatagagaggacaatttcttgtaaagatcacg |
198 |
Q |
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| T |
23262730 |
aaattggccatagagaggacaatttcatgtaaagatcacg |
23262691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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