View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15882_low_2 (Length: 466)
Name: NF15882_low_2
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15882_low_2 |
 | |
|
| [»] chr6 (19 HSPs) |
| |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
| [»] scaffold2177 (1 HSPs) |
| | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
| [»] scaffold0652 (1 HSPs) |
| | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0429 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 30135817 - 30135369
Alignment:
| Q |
18 |
atttcagagttgctaattcacccttctgtaagattaacaagaggacaaaaggagaggaagtgaagaaagacaagtcatagtaattcaattataa-aaaag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
30135817 |
atttcagagttgctaattcacccttctgtaagatttacaagaggacaaa-ggagaggaagtgaagaaagacaagtcatagtaattcagttataagaaaag |
30135719 |
T |
|
| Q |
117 |
tacaacttttaatgaaaacaaatgtaatcttgagtcaactgcactaatttttcgtttattactaagaaaatnnnnnnngattagatggtcattttcaaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
30135718 |
tacaacttttaatgaaaacaaatgtaatcttgagtcaactgcactaattttttgtttattactatgaaaataaaaaaagattagatggtcattttcaaat |
30135619 |
T |
|
| Q |
217 |
tcaaaaaagcaaattgtaacttgaaagcatctcaactagttttacattacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30135618 |
tcaaaaaagcaaattgtaacttgaaagcatctcaactagttttagattacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcatt |
30135519 |
T |
|
| Q |
317 |
cttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttca |
416 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30135518 |
cttaacatttttgaataaagcacggataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttca |
30135419 |
T |
|
| Q |
417 |
tcaaacaaaccctctttacagagccaattaaccattacattatacattat |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30135418 |
tcaaacaaaccctctttacagagccaattaaccatcacattatacattat |
30135369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 208 - 464
Target Start/End: Complemental strand, 24935170 - 24934912
Alignment:
| Q |
208 |
ttttcaaattcaaaaaagcaaattgtaacttgaaagcat--ctcaactagttttacattacagtagacctctatcaatcatttcacaaagaagtttcact |
305 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||| |||| || ||||||||||||| || ||||||| |||||||||||| ||||||||||| |
|
|
| T |
24935170 |
ttttcaaattcaaaatgacaaattgtaacttgaactcatatctcacctggttttacattacaatatacctctagcaatcatttcacgtagaagtttcacc |
24935071 |
T |
|
| Q |
306 |
gccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatgg |
405 |
Q |
| |
|
||||||||||||||| | || | ||| ||||||| || || | |||| ||||||||| ||||||| ||||| ||||| |||||||||||||| || || |
|
|
| T |
24935070 |
gccttatcattcttatcgttctcgaacaaagcacggacaagagtttcataagttacagcatcaggtatgcaaccgttgtcttccatttttgacactaagg |
24934971 |
T |
|
| Q |
406 |
acaatgcttcatcaaacaaaccctctttacagagccaattaaccattacattatacatt |
464 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| |||| ||| ||||| |||||||||||| |
|
|
| T |
24934970 |
acagtgcttcatcaaacaagccctctttacaaagcccattgaccatcacattatacatt |
24934912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 195 - 463
Target Start/End: Original strand, 29953180 - 29953447
Alignment:
| Q |
195 |
gattagatggtcattttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttacattacagtagacctctatcaatcatttcacaaa |
294 |
Q |
| |
|
||||||||| || |||| |||||||||| | |||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| || |
|
|
| T |
29953180 |
gattagatg-tcgttttgaaattcaaaataacaaattttaacttgaaagcatctcacctagttttacattatagtagacctctaacaatcatttcacgaa |
29953278 |
T |
|
| Q |
295 |
gaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttt |
394 |
Q |
| |
|
||||||| || |||||||||||||| |||| ||| ||||||| |||| | ||| |||||||| |||| ||||||||| |||| ||||||||| |
|
|
| T |
29953279 |
gaagtttaacagccttatcattcttgttgttttcgaacaaagcacaaataagagtttggtaagttatcgcatctggggtgcaaccattgtcttccatttt |
29953378 |
T |
|
| Q |
395 |
tgacaatatggacaatgcttcatcaaacaaaccctctttacagagccaattaaccattacattatacat |
463 |
Q |
| |
|
||||| || ||||||||| || ||||| ||||| |||||||| | | ||||||||| ||||||||||| |
|
|
| T |
29953379 |
tgacagtaaggacaatgcctcgtcaaataaaccttctttacaaaactcattaaccatcacattatacat |
29953447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 195 - 463
Target Start/End: Original strand, 29949383 - 29949650
Alignment:
| Q |
195 |
gattagatggtcattttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttacattacagtagacctctatcaatcatttcacaaa |
294 |
Q |
| |
|
||||||||| || |||| |||||||||| | |||||| |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| || |
|
|
| T |
29949383 |
gattagatg-tcgttttgaaattcaaaataacaaattttaacttgaaagcatctcacctagttttacattatagtagacctctaacaatcatttcacgaa |
29949481 |
T |
|
| Q |
295 |
gaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttt |
394 |
Q |
| |
|
||||||| || |||||||||||||| |||| ||| ||||||| |||| | ||| |||||||| ||| ||||||||| |||| ||||||||| |
|
|
| T |
29949482 |
gaagtttaacagccttatcattcttgttgttttcgaacaaagcacaaataagagtttggtaagttatcgcatttggggtgcaaccattgtcttccatttt |
29949581 |
T |
|
| Q |
395 |
tgacaatatggacaatgcttcatcaaacaaaccctctttacagagccaattaaccattacattatacat |
463 |
Q |
| |
|
||||| || ||||||||| || ||||| ||||| |||||||| | | ||||||||| ||||||||||| |
|
|
| T |
29949582 |
tgacagtaaggacaatgcctcgtcaaataaaccttctttacaaaactcattaaccatcacattatacat |
29949650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 195 - 464
Target Start/End: Complemental strand, 30053942 - 30053672
Alignment:
| Q |
195 |
gattagatggtcattttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttacattacagtagacctctatcaatcatttcacaaa |
294 |
Q |
| |
|
||||||||| || |||| |||||||||| | || || ||||||||||||| | || ||||| || |||||||||||| |||| |||||||||||| || |
|
|
| T |
30053942 |
gattagatgatccttttaaaattcaaaataacagatgttaacttgaaagcaccccacctagtgctagattacagtagacgtctaacaatcatttcacgaa |
30053843 |
T |
|
| Q |
295 |
gaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttt |
394 |
Q |
| |
|
||||| ||| |||||||||||||| | |||| ||| ||||||| |||| | ||||||| |||||| ||||||| ||||| ||||| |||||||| |
|
|
| T |
30053842 |
gaagtgtcagcgccttatcattcttgtcgttttcgaacaaagcacaaataagagtttcgtatgttacagcatcaggcatgcaaccgttgtcttccatttg |
30053743 |
T |
|
| Q |
395 |
tgacaatatggacaatgcttcatcaaacaaaccctctttacagag-ccaattaaccattacattatacatt |
464 |
Q |
| |
|
||| | || ||||||||||||||| || |||||||||||||| || ||| |||| ||| |||||||||||| |
|
|
| T |
30053742 |
tgagagtaaggacaatgcttcatcgaaaaaaccctctttacaaagcccatttaatcatcacattatacatt |
30053672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 209 - 459
Target Start/End: Complemental strand, 24898577 - 24898327
Alignment:
| Q |
209 |
tttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttaca-ttacagtagacctctatcaatcatttcacaaagaagtttcactgc |
307 |
Q |
| |
|
||||||||||| || | || ||||||||| |||| || |||| |||||||||| |||||||||||||||| || |||||||| || |||||||| || |
|
|
| T |
24898577 |
tttcaaattcagaataacagattgtaactagaaaacaactca-ctagttttactcttacagtagacctctagaaagcatttcacggaggagtttcacggc |
24898479 |
T |
|
| Q |
308 |
cttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggac |
407 |
Q |
| |
|
|||||||||| | | |||||||| ||||||| ||||| | ||| |||||||||||||||||| |||||| |||| |||||||| |||| || || |
|
|
| T |
24898478 |
cttatcattcatgtcgtttttgaacaaagcacggataagagttttgtaagttacaacatcaggtgtgcaaccattgtcttccatttcggacagtacaaac |
24898379 |
T |
|
| Q |
408 |
aatgcttcatcaaacaaaccctctttacagagccaattaaccattacattat |
459 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
24898378 |
aatgcttcgtcaaacaagccctctttacaaagcccattaatcatgacattat |
24898327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 424
Target Start/End: Original strand, 24738710 - 24738909
Alignment:
| Q |
226 |
caaattgtaacttgaaagcatctcaactagttttaca-ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacat |
324 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||| ||| |||||||||||| |||||||||||| |||||||| |||||||||||||||| | | | |
|
|
| T |
24738710 |
caaattgtaactaaaaagcatctcaccttgttttattcttatagtagacctctagcaatcatttcacgaagaagttccactgccttatcattcatgtcgt |
24738809 |
T |
|
| Q |
325 |
ttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaa |
424 |
Q |
| |
|
||| || ||||||| ||||| ||||||| |||||||| || |||||||||| |||| |||||||||||||| || ||||||||||| ||| ||||| |
|
|
| T |
24738810 |
tttcaaacaaagcacggataagaatttcgaaagttacaggattaggggtgcaaccattgtcttccatttttgacagtaaggacaatgctttatcgaacaa |
24738909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 463
Target Start/End: Complemental strand, 30150012 - 30149773
Alignment:
| Q |
226 |
caaattgtaacttgaaagcatctcaactagttttaca--ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaaca |
323 |
Q |
| |
|
||||||||| || |||| ||||| | |||||||||| ||| |||||||||||| |||||||||||| || || |||||| ||||||||||| | | |
|
|
| T |
30150012 |
caaattgtacctagaaaacatcttacctagttttactctttagagtagacctctagcaatcatttcacgaataaatttcaccgccttatcatttctgtcg |
30149913 |
T |
|
| Q |
324 |
tttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaaca |
423 |
Q |
| |
|
||| || ||||||| |||| |||||| ||||||||| ||||||| |||||| ||||| || ||||||||| | || ||||||||||||||| || | |
|
|
| T |
30149912 |
ctttcaaacaaagcacgaataataatttcataagttacaccatcaggagtgcaaccgttgtctttcatttttgagagtaaggacaatgcttcatcgaaaa |
30149813 |
T |
|
| Q |
424 |
aaccctctttacagagccaattaaccattacattatacat |
463 |
Q |
| |
|
| || |||||||| |||| ||||| ||| ||| ||||||| |
|
|
| T |
30149812 |
acccttctttacaaagcccattaatcatcacagtatacat |
30149773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 463
Target Start/End: Original strand, 21160140 - 21160378
Alignment:
| Q |
226 |
caaattgtaacttgaaagcatctcaactagttttaca-ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacat |
324 |
Q |
| |
|
|||||||||||| ||||||| ||| || |||||| ||| |||||| ||||| ||||||||| || |||||||| |||||||||||||||| | | | |
|
|
| T |
21160140 |
caaattgtaactaaaaagcatatcacctggttttattcttatagtagatctctaacaatcattttacgaagaagttccactgccttatcattcatgtcgt |
21160239 |
T |
|
| Q |
325 |
ttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaa |
424 |
Q |
| |
|
||| || ||||||| ||||| ||||||| |||||||| || |||||||||| |||| || ||||||||||| || ||| ||||||| ||| ||||| |
|
|
| T |
21160240 |
tttcaaacaaagcacggataagaatttcgaaagttacaggattaggggtgcaaccattgtctttcatttttgacagtaaggataatgctttatcgaacaa |
21160339 |
T |
|
| Q |
425 |
accctctttacagagccaattaaccattacattatacat |
463 |
Q |
| |
|
| ||||||||| || | ||||| ||| ||| ||||||| |
|
|
| T |
21160340 |
gctctctttacaaaggccattaatcataacagtatacat |
21160378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 431
Target Start/End: Original strand, 15714545 - 15714713
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttaca |
362 |
Q |
| |
|
|||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||| | ||||||| || | ||||| ||||| |||| ||||||||| |
|
|
| T |
15714545 |
ttacagaagacctcgagcaatcatttcacgcagaagtttctctgccttatcattctcatcatttttaaagagagcacggataattgtttcataagttaca |
15714644 |
T |
|
| Q |
363 |
acatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctct |
431 |
Q |
| |
|
|||| || ||||| |||| |||||||||||||| | || || |||||||||||| || |||||| |
|
|
| T |
15714645 |
gcatctggaatgcaaccattgtcttccatttttgacagcagggtcactgcttcatcaaataagccctct |
15714713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 436
Target Start/End: Complemental strand, 30029827 - 30029621
Alignment:
| Q |
231 |
tgtaacttgaaagcatctcaactagttttaca-ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttg |
329 |
Q |
| |
|
||||||| || ||||||||| || |||||| ||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||| | ||| |
|
|
| T |
30029827 |
tgtaactagatagcatctcaccttcttttactcttacaatagacctctagcaatcatttcacaaagaagtttctctgccatatctatcttgccttttcca |
30029728 |
T |
|
| Q |
330 |
aataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccct |
429 |
Q |
| |
|
|||| ||||| |||| ||||||||||||| | ||||||| | |||| || | |||||||||||| | | || |||| ||||||||||||| |||| |
|
|
| T |
30029727 |
aatagagcacaaataattatttcgtaagttatagcatcaggagcgcaaccattctcttccatttttgaaagcaaggtcaatacttcatcaaacaagccct |
30029628 |
T |
|
| Q |
430 |
ctttaca |
436 |
Q |
| |
|
||||||| |
|
|
| T |
30029627 |
ctttaca |
30029621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 24942528 - 24942447
Alignment:
| Q |
355 |
aagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctctttaca |
436 |
Q |
| |
|
|||||||| || |||||||||| |||| |||||||||||||| || ||||||||||||||||||||| |||| |||||| |
|
|
| T |
24942528 |
aagttacatgattaggggtgcaaccattgtcttccatttttgacactaaggacaatgcttcatcaaacaagccctttttaca |
24942447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 15726742 - 15726807
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacattttt |
328 |
Q |
| |
|
||||| |||||||||| |||||||||||| ||||||| | ||||||||||||||| | ||||||| |
|
|
| T |
15726742 |
ttacaatagacctctagcaatcatttcacgtagaagttgctctgccttatcattctcatcattttt |
15726807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 24731301 - 24731248
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcatt |
316 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
24731301 |
ttacagtagacctcttgcaatcatttcacgaagaagtttctctgccatatcatt |
24731248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 29074209 - 29074156
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcatt |
316 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
29074209 |
ttacagtagacctctcgcgatcatttcacgaagaagtttctctgccatatcatt |
29074156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 29078973 - 29078920
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcatt |
316 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
29078973 |
ttacagtagacctctcgcgatcatttcacgaagaagtttctctgccatatcatt |
29078920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 29106782 - 29106729
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcatt |
316 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
29106782 |
ttacagtagacctctcgcgatcatttcacgaagaagtttctctgccatatcatt |
29106729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 29116707 - 29116654
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcatt |
316 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
29116707 |
ttacagtagacctctcgcgatcatttcacgaagaagtttctctgccatatcatt |
29116654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 30577289 - 30577393
Alignment:
| Q |
203 |
ggtcattttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttacattacagtagacctctatcaatcatttcacaaagaagtttc |
302 |
Q |
| |
|
|||| |||| |||||||||| | ||| || ||||| |||| |||| || ||||||| ||| |||||||||||| |||||||||| |||||||||| |
|
|
| T |
30577289 |
ggtcgttttaaaattcaaaataacaagttataactagaaatcatcacacctagtttactcttatagtagacctctagaaatcatttcatcaagaagtttc |
30577388 |
T |
|
| Q |
303 |
actgc |
307 |
Q |
| |
|
||||| |
|
|
| T |
30577389 |
actgc |
30577393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 255 - 464
Target Start/End: Original strand, 44262138 - 44262347
Alignment:
| Q |
255 |
gttttacattacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgt |
354 |
Q |
| |
|
||||||||||||| || ||||||| |||||||||||| |||||||||||| | |||||||||||| |||||| || ||||||| |||| | |||||| |
|
|
| T |
44262138 |
gttttacattacaatatacctctaacaatcatttcacgaagaagtttcaccgtcttatcattcttgccattttcaaacaaagcacgaataagagtttcgt |
44262237 |
T |
|
| Q |
355 |
aagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctctttacagagccaattaaccattac |
454 |
Q |
| |
|
|||||||| ||| |||||||||| |||||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||| |||| ||| ||||| || |
|
|
| T |
44262238 |
aagttacagcattaggggtgcaactgttgtcttccatttttgacactaaggacaatgcgtcatcaaacaagccctctttacaaagcccattgaccatcac |
44262337 |
T |
|
| Q |
455 |
attatacatt |
464 |
Q |
| |
|
| | |||||| |
|
|
| T |
44262338 |
actgtacatt |
44262347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 208 - 460
Target Start/End: Original strand, 43365 - 43619
Alignment:
| Q |
208 |
ttttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttaca--ttacagtagacctctatcaatcatttcacaaagaagtttcact |
305 |
Q |
| |
|
|||| ||||||| || | |||||||||| | |||| ||||| | |||||||||| ||| |||||||||||| |||||||||||| || |||||||| |
|
|
| T |
43365 |
ttttaaaattcataataacaaattgtaagtagaaaacatcttacctagttttactctttagagtagacctctagcaatcatttcacgaatcagtttcacc |
43464 |
T |
|
| Q |
306 |
gccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatgg |
405 |
Q |
| |
|
||||||||||| | |||| || ||||||| |||| |||||| ||||||||| ||||||| |||||| ||||| |||||||||||| | || || |
|
|
| T |
43465 |
gccttatcatttctgttgttttcaaacaaagcacgaataataatttcataagttacaccatcaggagtgcaaccgttgtcttccatttttgagagtaagg |
43564 |
T |
|
| Q |
406 |
acaatgcttcatcaaacaaaccctctttacagagccaattaaccattacattata |
460 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||| ||||| ||| ||| |||| |
|
|
| T |
43565 |
acaatgcttcatcaaaaaacccttctttacaaagcccattaatcatcacagtata |
43619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 463
Target Start/End: Complemental strand, 9783049 - 9782785
Alignment:
| Q |
208 |
ttttcaaattcaaaaaagcaaattgtaacttgaaagcatctcaactagttttaca--ttacagtagacctctatcaatcatttcacaaagaagtttcact |
305 |
Q |
| |
|
|||| ||||||| || | |||| |||||| |||||||||||| |||||||||| ||| | ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9783049 |
ttttaaaattcacaataacaaactgtaaccggaaagcatctcacctagttttactctttagaacagacctctagcaatcatttcacaaagaagtttcacc |
9782950 |
T |
|
| Q |
306 |
gccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcaggggtg-------caattgttgtgttccatttttgac |
398 |
Q |
| |
|
||||||||||| | | ||| || ||||||| ||| | |||| |||||||| ||||||| ||| ||| | ||| |||||||||||| |
|
|
| T |
9782949 |
gccttatcattttggtcgctttcaaacaaagcacgaatacgagtttcataagttactgcatcaggagtgaggagtgcaaccgatgtcttccatttttgag |
9782850 |
T |
|
| Q |
399 |
aatatggacaatgcttcatcaaacaaaccctctttacagagccaattaaccattacattatacat |
463 |
Q |
| |
|
| || ||||||||||||||| || ||||||||||||||||||| ||||| ||| ||| ||||||| |
|
|
| T |
9782849 |
agtaaggacaatgcttcatcgaaaaaaccctctttacagagcccattaatcatcacagtatacat |
9782785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 460
Target Start/End: Complemental strand, 24227182 - 24227069
Alignment:
| Q |
347 |
aatttcgtaagttacaacatcaggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctctttacagagccaatta |
446 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||| ||||||| |||||||||||| | || ||||||||||||||| || || || |||||||| |||| |||| |
|
|
| T |
24227182 |
aatttcataagttacaccatcaggagtgcacttgttgtcttccatttttgagagtaaggacaatgcttcatccaaaaacccttctttacaaagcccatta |
24227083 |
T |
|
| Q |
447 |
accattacattata |
460 |
Q |
| |
|
| ||| ||| |||| |
|
|
| T |
24227082 |
atcatcacagtata |
24227069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2177 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold2177
Description:
Target: scaffold2177; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 441
Target Start/End: Complemental strand, 346 - 173
Alignment:
| Q |
267 |
agtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacat |
366 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||| |||| | |||| ||||||||||||| |
|
|
| T |
346 |
agtagacctctatcaatcatttcatgaagaatcttctctgccttatcattcttgcggtttttgaacaaagcacgaataatagtttcataagttacaacat |
247 |
T |
|
| Q |
367 |
caggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctctttacagagcc |
441 |
Q |
| |
|
|| | || || || | |||||||| || ||| | |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
246 |
catgagtcaaaccattttcttccatttgcaac-ataagtacaatgcttcatcaaacaaaccctctctacaaagcc |
173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 395
Target Start/End: Original strand, 121040 - 121165
Alignment:
| Q |
270 |
agacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcag |
369 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| ||||||||||||||| | ||||||| || | ||| |||| | |||| |||||||||||||||| |
|
|
| T |
121040 |
agacctctagtaatcatttcacgtagaagtttctctgccttatcattctcatcatttttaaaaagagcgtaaataatagtttcataagttacaacatcag |
121139 |
T |
|
| Q |
370 |
gggtgcaattgttgtgttccattttt |
395 |
Q |
| |
|
| |||||| |||| |||||||||| |
|
|
| T |
121140 |
gagtgcaaccattgtcttccattttt |
121165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 140708 - 140667
Alignment:
| Q |
261 |
cattacagtagacctctatcaatcatttcacaaagaagtttc |
302 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||| |
|
|
| T |
140708 |
cattatagtagacctctagcaatcatttcacgaagaagtttc |
140667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 848 - 913
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacattttt |
328 |
Q |
| |
|
|||||||||||| | | |||||||||||| ||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
848 |
ttacagtagaccgcgagcaatcatttcacgtagaagtttctctgccttatcattctcatcattttt |
913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 431
Target Start/End: Complemental strand, 9437 - 9273
Alignment:
| Q |
267 |
agtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacat |
366 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||||||| || |||| | ||||||| || | ||| || || |||||| |||||||| ||| |
|
|
| T |
9437 |
agtagacctctagcaatcatttcacgtagaagtttctctgccttttcgttctcatcatttttaaagagagcgtggacaattatttcgaaagttacagcat |
9338 |
T |
|
| Q |
367 |
caggggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctct |
431 |
Q |
| |
|
||| ||||| |||| ||||||||||||||| | | ||| |||||||||| ||| |||||| |
|
|
| T |
9337 |
taggaatgcaaccattgtcttccatttttgacaacagagccaaagcttcatcaagcaagccctct |
9273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 430
Target Start/End: Complemental strand, 27792 - 27632
Alignment:
| Q |
270 |
agacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttttgaataaagcactgataacaatttcgtaagttacaacatcag |
369 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||| |||| |||| | ||||||| || | ||| | |||| | |||| |||||||||||||||| |
|
|
| T |
27792 |
agacctctagcaatcatttcacgtagaagtttctctgctttatggttctcatcatttttaaaaagagcgcgaataatagtttcataagttacaacatcag |
27693 |
T |
|
| Q |
370 |
gggtgcaattgttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctc |
430 |
Q |
| |
|
| |||||| || | |||||||||| || || || || |||||||||||||| ||||| |
|
|
| T |
27692 |
gagtgcaaccattatcttccattttttccagtagggtcatagcttcatcaaacaatccctc |
27632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 30871 - 30926
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattct |
318 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
30871 |
ttacaatagacctctaacaatcatttcacgaagaagtttctccgccttttcattct |
30926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 125680 - 125731
Alignment:
| Q |
267 |
agtagacctctatcaatcatttcacaaagaagtttcactgccttatcattct |
318 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
125680 |
agtagacctctagcaatcatttcacgaagaagtttctccgccttttcattct |
125731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 6642 - 6578
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttt |
327 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||| ||||| | || |||||| |||||| |
|
|
| T |
6642 |
ttacagtagacctctagcaatcatttcacgtagtagtttctctgccctttcgttcttatcatttt |
6578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 42871 - 42935
Alignment:
| Q |
263 |
ttacagtagacctctatcaatcatttcacaaagaagtttcactgccttatcattcttaacatttt |
327 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||| ||||| | || |||||| |||||| |
|
|
| T |
42871 |
ttacagtagacctctaacaatcatttcacgtagtagtttctctgccctttcgttcttatcatttt |
42935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 17251641 - 17251581
Alignment:
| Q |
381 |
ttgtgttccatttttgacaatatggacaatgcttcatcaaacaaaccctctttacagagcc |
441 |
Q |
| |
|
|||| |||||||||||||| | || |||||||||||||||||| | ||||||||| |||| |
|
|
| T |
17251641 |
ttgtcttccatttttgacagcaaggtcaatgcttcatcaaacaagctctctttacaaagcc |
17251581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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