View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15882_low_4 (Length: 444)

Name: NF15882_low_4
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15882_low_4
NF15882_low_4
[»] chr8 (1 HSPs)
chr8 (10-428)||(39854372-39854789)
[»] chr4 (2 HSPs)
chr4 (23-425)||(21955225-21955622)
chr4 (178-340)||(11188340-11188502)
[»] chr3 (2 HSPs)
chr3 (51-330)||(52056034-52056312)
chr3 (51-330)||(53575644-53575922)
[»] scaffold0002 (1 HSPs)
scaffold0002 (51-330)||(466625-466903)
[»] chr5 (1 HSPs)
chr5 (51-330)||(35896017-35896295)
[»] chr2 (1 HSPs)
chr2 (51-330)||(30200789-30201067)
[»] chr1 (2 HSPs)
chr1 (51-330)||(31353555-31353833)
chr1 (51-330)||(16990842-16991120)
[»] chr7 (1 HSPs)
chr7 (149-330)||(27142913-27143094)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Original strand, 39854372 - 39854789
Alignment:
Q  10 catcatcatatgctaaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggtt 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39854372 catcatcatatactaaatcaatttcattgcagtgtaattctgaaacttttcgttgagatgacaacatatgaattgtttcttgcagatgtaaatcatggtt 39854471  T
Q  110 atgctcttccacaaattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 209  Q
    |||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854472 atgctcttccacaaattcatgaaccaccatttttt-caaccacatttttaagtcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 39854570  T
Q  210 tgttttatgatcatgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatcc 309  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  39854571 tgttttacgatcatgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctacatgaattagttgaaccatcttttttcttgtgtgtataatcc 39854670  T
Q  310 ttcctaactccaaatcaaacccttccaccatccatacttaacccaaaagttccaagcagtctcaatgttatcaaaaaccatatttatctatggcttccaa 409  Q
    |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854671 ttcctccctccaaatcaaacccttccaccatccatactttacccaaaagttccaagcagtctcaatgttatcaaaaaccatatttatctatggcttccaa 39854770  T
Q  410 ttttcttgcatcttgtggt 428  Q
    |||||||||||||||||||    
T  39854771 ttttcttgcatcttgtggt 39854789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 23 - 425
Target Start/End: Complemental strand, 21955622 - 21955225
Alignment:
Q  23 taaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccaca 122  Q
    |||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| | ||| |   |||||||||||||||||||| || ||  ||    
T  21955622 taaatcaatttcattgcaatgaaattttgatactttttgttgagatgacaacatatgaagtgtttgtgatagatgtaaatcatggttatgttcctctgca 21955523  T
Q  123 aattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatca 222  Q
    |||||||| |||||||        |||||||||||||| ||||  | |||||  |||||| |||  ||||||| || ||||||||| ||||||||  ||     
T  21955522 aattcatgcaccaccaatgttgg-aaccacatttttaagtcctggtgttgctttacaatttgttacagtctctggttttggattgattgttttatattct 21955424  T
Q  223 tgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaa 322  Q
     ||||||||| ||| |  |||||||||||| | ||||||||||| |||||| ||| ||||||||||||||||||  |||||||||  |||||   |||||    
T  21955423 cgtttgtctgacttccaaaaaccttctttacatcaaacaaatctggaagaactagctgaaccatcttttttcttatgtgtataatgtttcctcgatccaa 21955324  T
Q  323 atcaaacccttccaccatccatacttaacccaaaagttccaagcagtctcaatgttatcaaaaaccatatttatctatggcttccaattttcttgcatct 422  Q
    ||| |||| |||||    ||||| |   |||||||||||||||||  ||||||| | ||||||||||||  |||||  | |||||| |||||||||||||    
T  21955323 atccaacctttcca----ccataatatgcccaaaagttccaagcaacctcaatgctgtcaaaaaccatacatatcttcgtcttccatttttcttgcatct 21955228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 11188502 - 11188340
Alignment:
Q  178 caattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctagaagaattag 277  Q
    ||||| ||||| |||||| | ||||||||||  ||||||  |||  |||||||||||||||| |||||||| ||| | |||||||||||  ||||| | |    
T  11188502 caatttgttctggtctctggccttggattgatagttttaaaatctcgtttgtctggctttcgcaaaccttcgttacaacaaacaaatctgcaagaagtcg 11188403  T
Q  278 ttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacccttccaccat 340  Q
    || ||||||||||| ||||  ||| ||| |  ||||| |||||||||| ||| ||||||||||    
T  11188402 ttaaaccatcttttgtcttatgtgaatattgtttcctcactccaaatccaactcttccaccat 11188340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 330
Target Start/End: Original strand, 52056034 - 52056312
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  52056034 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 52056132  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 250  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  52056133 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 52056232  T
Q  251 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||| || |||||||||| ||||| ||||| |||| ||||    
T  52056233 tgcagcaaacaaacctacaagaagaaactgaaccatcctttttcctgtgtgtataatctttcctcactccgaatccaacc 52056312  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 330
Target Start/End: Original strand, 53575644 - 53575922
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  53575644 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 53575742  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 250  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  53575743 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 53575842  T
Q  251 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  53575843 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 53575922  T

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Target: scaffold0002 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 330
Target Start/End: Original strand, 466625 - 466903
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  466625 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 466723  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 250  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  466724 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 466823  T
Q  251 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  466824 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 466903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 330
Target Start/End: Complemental strand, 35896295 - 35896017
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  35896295 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 35896197  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 250  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  35896196 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 35896097  T
Q  251 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  35896096 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 35896017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 330
Target Start/End: Original strand, 30200789 - 30201067
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  30200789 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 30200887  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 250  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  30200888 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 30200987  T
Q  251 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  30200988 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 30201067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 51 - 330
Target Start/End: Complemental strand, 31353833 - 31353555
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  31353833 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 31353735  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 250  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  31353734 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 31353635  T
Q  251 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  31353634 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 31353555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 330
Target Start/End: Complemental strand, 16991120 - 16990842
Alignment:
Q  51 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 150  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  16991120 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 16991022  T
Q  151 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 250  Q
    ||||| |||| |||||| |||| |  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  16991021 acattcttaagtcctaaccttgtttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 16990922  T
Q  251 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  16990921 tgcagcaaacaaacctacaagaagaaactgaaccatcctttttgctgtgtgtataatctttcctcactccgaatccaacc 16990842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 330
Target Start/End: Complemental strand, 27143094 - 27142913
Alignment:
Q  149 ccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttc 248  Q
    ||||||| |||| || ||||||||||  |||||| ||||| || |||||||||| |||   ||||||||||||  | |||| |||||||||||  |||||    
T  27143094 ccacattcttaagtcataatcttgcttcacaatttgttctggtttctagtcttgaattctttgttttatgatctcgcttgtttggctttcgtatgccttc 27142995  T
Q  249 tttaaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 330  Q
    |||  ||||||| || ||| |||||  | |||||||||| ||  || || |||||||||| ||||| |||||||||| ||||    
T  27142994 tttgcagcaaacgaacctacaagaagaaattgaaccatccttgctcctgtgtgtataatctttcctcactccaaatccaacc 27142913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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