View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15882_low_7 (Length: 405)
Name: NF15882_low_7
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15882_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10601152 - 10600767
Alignment:
| Q |
1 |
accttgtgaatttcagtcttttactctaaagatgtacccagcagaactctcaatgacagcttggatttgctttttgggtatctttgaaggtggaattgca |
100 |
Q |
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| T |
10601152 |
accttgtgaatttcagtcttttaccctaaagatgtacccagcagagctctcaatgacagcttggatttgctttttgggtatctttgaaggtggaattgca |
10601053 |
T |
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| Q |
101 |
actcttatatttgaacgtgacttcagtgtttgggccataggttttgactctaggcttcttgcatgtgtttactctgtaagtacttannnnnnncattaat |
200 |
Q |
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| T |
10601052 |
actcttatatttgaacgtgacttcagtgtttgggccataggttttgactctaggcttcttgcatgtgtttactctgtaagtacttatttttttcattaat |
10600953 |
T |
|
| Q |
201 |
tagcttaattaaactaacaattaaaaccattaaggtgattaattaagaagttgtgatgtgtagggtattgtgtgctctggaatggcttactatgtacaag |
300 |
Q |
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| T |
10600952 |
tagcctaattaaactaacaattaaaaccattaaggtgattaattaagaagttgtgatgtgtagggtattgtgtgctctggaatggcttactatgtacaag |
10600853 |
T |
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| Q |
301 |
gagttgtgacaagagaacgtggccctgtgtttgttacttctttcagtcctttatgtatgattatcactgctgcattgggttccatt |
386 |
Q |
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| T |
10600852 |
gagttgtgacaagagaacgtggccctgtgtttgttacttctttcagtcctttatgtatgattatcactgctgcattgggttccatt |
10600767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 273 - 382
Target Start/End: Complemental strand, 32601836 - 32601727
Alignment:
| Q |
273 |
tgctctggaatggcttactatgtacaaggagttgtgacaagagaacgtggccctgtgtttgttacttctttcagtcctttatgtatgattatcactgctg |
372 |
Q |
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| T |
32601836 |
tgctctggaatggcatattatgtacaaggagttgtaactagagaacgtggaccagtttttgtaacatcttttagtccactatgtatgattatcactgctg |
32601737 |
T |
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| Q |
373 |
cattgggttc |
382 |
Q |
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|||||||||| |
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| T |
32601736 |
cattgggttc |
32601727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 32602105 - 32601963
Alignment:
| Q |
29 |
aagatgtacccagcagaactctcaatgacagcttggatttgctttttgggtatctttgaaggtggaattgcaactcttatatttgaacgtgacttcagtg |
128 |
Q |
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|||| ||| |||||||| || ||| | ||||| ||||||||||| ||||||| |||| ||| ||||||| | |||||||||||| | ||| | |||| |
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| T |
32602105 |
aagaagtatccagcagagctatcactaacagcatggatttgcttgatgggtattattgagggttcaattgcatcacttatatttgaaagagacatgagtg |
32602006 |
T |
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| Q |
129 |
tttgggccataggttttgactctaggcttcttgcatgtgttta |
171 |
Q |
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| |||| |||||||| ||||| ||||||||||| |||||||| |
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| T |
32602005 |
tgtgggtcataggttgggactcaaggcttcttgcttgtgttta |
32601963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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