View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15882_low_8 (Length: 393)
Name: NF15882_low_8
Description: NF15882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15882_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 4426973 - 4427337
Alignment:
| Q |
17 |
aaattaaaccattcttctgtaatataaataaatagaagaacgattattatttggaagnnnnnnnnntgctgccaccatcatcttatctctctgacctttt |
116 |
Q |
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| T |
4426973 |
aaattaaaccattcttctgtaaaataaataaatagaagaacgattattatttggaa-aaaaaaaaatgctgccaccatcatcttatctctctgacctttt |
4427071 |
T |
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| Q |
117 |
ccattcattttgacatatagtggtttgtattgccgtgacaaattaaactcaacgatcgtgacatgaatctcggagcatggtcaaaaaaggattcctcaag |
216 |
Q |
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| T |
4427072 |
caattcattttgacatatagtggtttgtattgccgtgacaaattaaactcaacgatcgtgacatgaatctcggagcatggtcgaaaaaggattcctcaag |
4427171 |
T |
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| Q |
217 |
aacaccattttataaaactacattattttctattcattgaggtactatttttaatagatatagtgagttttttgtcaatagcaaatcagagcgcacttgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4427172 |
aacaccattttataaaactacattattttctattcattgaggtactatttttaatagatatagtgagttttttgtcaatagcaaatcagagcgcacttgt |
4427271 |
T |
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| Q |
317 |
taacttattctttaacgtttttagatgagagtaagttatcaactctctttattcaaatatgttcat |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4427272 |
taacttattctttaacgtttttagatgagagtaagttatcaactctctttattcaaatatgttcat |
4427337 |
T |
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Back To:
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 3303531 - 3303580
Alignment:
| Q |
312 |
cttgttaacttattctttaacgtttttagatgagagtaagttatcaactc |
361 |
Q |
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| T |
3303531 |
cttgctaacttagtctttcatgtttttagatgagagtaagttagcaactc |
3303580 |
T |
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