View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15883_low_2 (Length: 348)
Name: NF15883_low_2
Description: NF15883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15883_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 332
Target Start/End: Complemental strand, 36333732 - 36333409
Alignment:
| Q |
12 |
acagaaagatatacacaaatatttcaaagtgtagaacaaaaatg----gttaagcaaatgagtgagggaaaaatagaaaatttgttaagcatataaaaat |
107 |
Q |
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| T |
36333732 |
acagaaagacatacacaaatatttcaa-gtgtagaacaaaaatgcatggttaagcaaatgagtgagggaaaaatagaaaatttgttaagcatataaaaat |
36333634 |
T |
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| Q |
108 |
gctacacttttaattcaatgaagaacaaaaagatggcatgataatattaaagcgtgctcactgaattttgagaatgttgaagtccatttgaccatttttc |
207 |
Q |
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| T |
36333633 |
gctacacttttaattcaatgaagaacaaaaagatggcatgataatattaaagtgtgctcactgaattttgagaatgttgaagtccatttgaccatttttc |
36333534 |
T |
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| Q |
208 |
agtaggaatgcaatcatcttcaatgtgatatggatagcaaaatggatcattttcagccattttttgtgaactgtttctttagacttgtgttagagaaaca |
307 |
Q |
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| T |
36333533 |
agtaggaatgcaatcatcttcaatgtgatatggatagcaaaatggatcattttcagccattttttgtgaactgtttctttagacttgtgttagagaaaca |
36333434 |
T |
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| Q |
308 |
caagttttcactatatcaagtgaag |
332 |
Q |
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| T |
36333433 |
caagttttcactatatcaagtgaag |
36333409 |
T |
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