View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15884_high_10 (Length: 342)
Name: NF15884_high_10
Description: NF15884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15884_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 17075410 - 17075743
Alignment:
| Q |
7 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagaggaagaaagtgaatgga |
106 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||| | || |||| ||| ||||||||||||| ||| |
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| T |
17075410 |
cgctggtgttatttcttcggcaaggaagaaggttaagaaagtggtgcggcccattgcacaatccagtaccatcgttaacaagcggaagaaagtgaacgga |
17075509 |
T |
|
| Q |
107 |
attttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaat |
206 |
Q |
| |
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|||||||| || ||||| ||||| |||| |||||||||||| |||| |||||||| || || | ||||| ||||| ||||||||||||| |||||||| |
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| T |
17075510 |
attttgcgacactcggtgattagtctgaaaaaggtggcgcggctgcctagcaaagatcgttcctcagttttacacatcttaaaatctaaattgagaaaat |
17075609 |
T |
|
| Q |
207 |
tacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaa |
306 |
Q |
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|
||||||| ||||| || |||||||||||||| | | |||||||||| ||| ||| ||||| ||||| || |||||||| |||||||||||||||||||| |
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| T |
17075610 |
tacaaggctcggaacgccttaaaaaggcggtaaaagtggtttcttcgggagcttcggatggtagttcgtcatcggggtccgttaacaatgattgggttaa |
17075709 |
T |
|
| Q |
307 |
ttgggtggcagtgcatgggaatgagaaggttgtg |
340 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
17075710 |
ttgggtggcagtgcatggaaatgagaaggttgtg |
17075743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 11053484 - 11053702
Alignment:
| Q |
7 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagt-tcaatagttataaagaggaagaaagtgaatgg |
105 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||| || || | | | || |||||||||||||||| |
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| T |
11053484 |
cgctggtgttatttcatcggcaagaaagaaggttaagaaagtggtgcggcctattgcccaatccggtatctgt-gcaaacaatcggaagaaagtgaatgg |
11053582 |
T |
|
| Q |
106 |
aattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaa |
205 |
Q |
| |
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|| ||||||| ||||| |||||||||| ||||||||||||||||| |||||||| ||| || || |||| || || ||||||||||||||||| ||| |
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| T |
11053583 |
ggttctgcggcactcggtgattagtttgaaaaaggtggcgcggttgcctagcaaagatcggtccaccattttacatatcttaaaatctaaatcgaggaaa |
11053682 |
T |
|
| Q |
206 |
ttacaaggttcggatcgtct |
225 |
Q |
| |
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||||||||||| || ||||| |
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| T |
11053683 |
ttacaaggttcagaccgtct |
11053702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 333
Target Start/End: Original strand, 11064036 - 11064148
Alignment:
| Q |
221 |
cgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgc |
320 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| |||||| || || |||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
11064036 |
cgtcttaaaaaggtggttaaggtggtttcctcggaagtttcggaaggtagttcctcgtcgggatcggttaataatgattgggtcaattgggtggcagtgc |
11064135 |
T |
|
| Q |
321 |
atgggaatgagaa |
333 |
Q |
| |
|
||| ||||||||| |
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|
| T |
11064136 |
atgagaatgagaa |
11064148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 90 - 333
Target Start/End: Complemental strand, 17684166 - 17683923
Alignment:
| Q |
90 |
ggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaa |
189 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||| |||||||||| |||||| |||||||| ||| || ||||||| || || ||||| |
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| T |
17684166 |
ggaagaaagtgaatggggttttgcggcactcggtgattagtttgaaaaaggtggcgcagttgcctagcaaagatcggtccaccgttttacatatcttaaa |
17684067 |
T |
|
| Q |
190 |
atctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggtt |
289 |
Q |
| |
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|||||||||||| |||||||||||||| || ||||||||||||| ||| | || |||||| ||| ||||||| || || |||||||||||| |||||||| |
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| T |
17684066 |
atctaaatcgaggaaattacaaggttcagaccgtcttaaaaaggtggtaaaggtggtttcctcgggagtttcggaaggtagttcctcgtcgaggtcggtt |
17683967 |
T |
|
| Q |
290 |
aacaatgattgggttaattgggtggcagtgcatgggaatgagaa |
333 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17683966 |
aataatgattgggttaattgggtggcagtgcatgggaatgagaa |
17683923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 336
Target Start/End: Complemental strand, 36160065 - 36159902
Alignment:
| Q |
173 |
gttttgcacattttaaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagtt |
272 |
Q |
| |
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|||||||||||| ||||||||||| | ||||||||||| || ||||||||||| ||||||||||| | || || |||||| ||| ||||||| |||| |
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| T |
36160065 |
gttttgcacattctaaaatctaaagctagaaaattacatgggtcggatcgtctgaaaaaggcggtgaaggtggggtcttcgggagcttcagataaaagtt |
36159966 |
T |
|
| Q |
273 |
cctcgtcggggtcggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggt |
336 |
Q |
| |
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| || || | || |||||||| ||||||||||||| |||| |||||||||||||||||||| |
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| T |
36159965 |
cttcttcatgttcagttaacaacgattgggttaattttgtggttgtgcatgggaatgagaaggt |
36159902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 17684249 - 17684198
Alignment:
| Q |
7 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggcct |
58 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
17684249 |
cgctggtgttatttcatcggcaagaaagaaggtcaggaaagtggtgcggcct |
17684198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 86 - 339
Target Start/End: Original strand, 10559739 - 10559992
Alignment:
| Q |
86 |
aagaggaagaaagtgaatggaattttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattt |
185 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||||| |||||||||| ||||||| || | |||| |||||||| | || ||||||| ||||| | |
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|
| T |
10559739 |
aagaggaagaaagtgaatgggtttctgcggcactcggtgattagtttgaaaaaggtggggcagctgcctagcaaagatcaatccaccgttttacacatct |
10559838 |
T |
|
| Q |
186 |
taaaatctaaatcgagaaaattacaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| ||||||||||| | || |||||||||| ||| ||||||||| ||||| || ||||| || |
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| T |
10559839 |
taaaatctaaatcgagaaaattacaaggatcagatcgtctcaaaaaggcggtaaaggtggtttcttcgggagcttcagatggtagttcttcctcgggttc |
10559938 |
T |
|
| Q |
286 |
ggttaacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgt |
339 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10559939 |
agataacaatgattgggttaattgggtggcagtgcatgggaatgagaaggttgt |
10559992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 10558434 - 10558490
Alignment:
| Q |
7 |
cgctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgc |
63 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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|
| T |
10558434 |
cgctggtgttatttcttcggcaagaaagaaggttaagaaagtggtgcggcctattgc |
10558490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 26741878 - 26741546
Alignment:
| Q |
8 |
gctggtgttatttcttcgacaagaaagaaggttaagaaagtggtgcggccttttgctaaatccagttcaatagttataaagaggaagaaagtgaatggaa |
107 |
Q |
| |
|
|||||||||||||| ||| | || ||||||||||||| ||||| || |||| ||||| |||| || | | |||| ||| ||||||||||||||| | |
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|
| T |
26741878 |
gctggtgttatttcatcggctaggaagaaggttaagagagtggcgcagcctattgctcaatcatgtacctttgttaacaagcggaagaaagtgaatgaga |
26741779 |
T |
|
| Q |
108 |
ttttgcggcattcggtatttagtttgaagaaggtggcgcggttgcccagcaaagaccgggccgccgttttgcacattttaaaatctaaatcgagaaaatt |
207 |
Q |
| |
|
| || ||| | |||| |||||||||| ||||||| ||| ||||| ||||||| || || | ||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
26741778 |
tcttacggaacccggtgattagtttgaaaaaggtggatcggctgccctgcaaagatcgttccacagttttacacatcttaaaatctaagtcgagaaaatt |
26741679 |
T |
|
| Q |
208 |
acaaggttcggatcgtcttaaaaaggcggttagggcggtttcttcgagagtttcagatgggagttcctcgtcggggtcggttaacaatgattgggttaat |
307 |
Q |
| |
|
|||||| |||||||||||||| ||||| || |||| |||||||||| ||| ||| ||||| ||||| || ||||| || |||||||| |||||||||||| |
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|
| T |
26741678 |
acaaggatcggatcgtcttaagaaggctgtaagggtggtttcttcgggagcttcggatggtagttcttcctcgggttcagttaacaacgattgggttaat |
26741579 |
T |
|
| Q |
308 |
tgggtggcagtgcatgggaatgagaaggttgtg |
340 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
26741578 |
tgggtggaagtgcatgggaatgagaaggttgtg |
26741546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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