View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15884_high_17 (Length: 300)
Name: NF15884_high_17
Description: NF15884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15884_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15534866 - 15535102
Alignment:
| Q |
1 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatattgtttgattttcgccatccacctcccatatcaagcttggatgagcactaataagctcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15534866 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatatcgttcgattttcgccatccacctcccatatcaagcttggat-agcactaataagctcc |
15534964 |
T |
|
| Q |
101 |
gataaaaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttgactcctttgatgagtagtgtctgtcta |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15534965 |
gataaaaaccaaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttaactcctttgatgagtagtgtctgtcta |
15535064 |
T |
|
| Q |
201 |
gaatcgtggtccaaagaaatttaacgaattgtaaaacc |
238 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
15535065 |
gaatcgtggtccaaagaaatttaacgaattgaaaaacc |
15535102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15518051 - 15518291
Alignment:
| Q |
1 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatattgtttgattttcgccatccacctcccatatcaagcttggatgagcactaataagctcc |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15518051 |
gaagatactggcatgccgatgcaaaacagctatgtgtaatatagttcgattttcgcaatccacctcccatatcaagcttggatgggcactaataagctcc |
15518150 |
T |
|
| Q |
101 |
gataaaaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttgactc---ctttgatgagtagtgtctgt |
197 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||| | |
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| T |
15518151 |
gataagaacccaaaatttccaatttcagcagcatcaaatattagttgagaaggtttatttatgatttcatttaactccttctttgatgagtagtatcttt |
15518250 |
T |
|
| Q |
198 |
ctagaatcgtggtccaaagaaatttaacgaattgtaaaacc |
238 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| |||||| |
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| T |
15518251 |
ctagaatcgtggtccagagaaatttaaccaattggaaaacc |
15518291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 15494268 - 15494504
Alignment:
| Q |
5 |
atactagcatgccgatgcaaaacagctatgtgtaatattgtttgattttcgccatccacctcccatatcaagcttggatgagcactaataagctccgata |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15494268 |
atactagcatgccgatgcaaaacagctatgtgtaatatagttcgatttttgctatccatctcccatatcaagcttggatgggcactaataagctccgata |
15494367 |
T |
|
| Q |
105 |
aaaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttgac---tcctttgatgagtagtgtctgtctag |
201 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |||||||||| ||||||||||||||| |
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| T |
15494368 |
agaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggtttatttatgatttcgtttaactcatcctttgatgtgtagtgtctgtctag |
15494467 |
T |
|
| Q |
202 |
aatcgtggtccaaagaaatttaacgaattgtaaaacc |
238 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||| |
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| T |
15494468 |
aatcgttgtccaaagaaatttaaccaattggaaaacc |
15494504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15655200 - 15655440
Alignment:
| Q |
1 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatattgtttgattttcgccatccacctcccatatcaagcttggatgagcactaataagctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||| |||| | |||| | |||||| |
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| T |
15655200 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatatagtttgatttttgctatccacatcccatatcaagctaggataaacactgagaagctct |
15655299 |
T |
|
| Q |
101 |
gataaaaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcattt---gactcctttgatgagtagtgtctgt |
197 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| | | |
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| T |
15655300 |
gataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcattaatgattttatttagctcctcctttgatgagtagtgttttt |
15655399 |
T |
|
| Q |
198 |
ctagaatcgtggtccaaagaaatttaacgaattgtaaaacc |
238 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||| |||||| |
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| T |
15655400 |
caagaatcgtggtccaaagaaatttaaccaattggaaaacc |
15655440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15646048 - 15646288
Alignment:
| Q |
1 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatattgtttgattttcgccatccacctcccatatcaagcttggatgagcactaataagctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| | |||| || |||||| |||||||||||||| |||| | |||| | |||||| |
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|
| T |
15646048 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatatagttcggtttttgctatccacatcccatatcaagctaggataaacactgagaagctct |
15646147 |
T |
|
| Q |
101 |
gataaaaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttga---ctcctttgatgagtagtgtctgt |
197 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| ||||||||| | | |
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|
| T |
15646148 |
gataagaatccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttaggattttgtttaactcctcctttgaggagtagtgttttt |
15646247 |
T |
|
| Q |
198 |
ctagaatcgtggtccaaagaaatttaacgaattgtaaaacc |
238 |
Q |
| |
|
| |||||||||||||||||||||||||| || || |||||| |
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| T |
15646248 |
caagaatcgtggtccaaagaaatttaaccaactggaaaacc |
15646288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 15625665 - 15625889
Alignment:
| Q |
16 |
ccgatgcaaaacagctatgtgtaatattgtttgattttcgccatccacctcccatatcaagcttggatgagcactaataagctccgataaaaacccaaaa |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| |||||| || |||||| |||||||||||||| |||| | ||||||||||||||||||| || |||||| |
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|
| T |
15625665 |
ccgatgcaatacagctatgtgtaatatagttcgatttttgctatccacatcccatatcaagctaggataaacactaataagctccgataagaatccaaaa |
15625764 |
T |
|
| Q |
116 |
tttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttgact---cctttgatgagtagtgtctgtctagaatcgtggtcc |
212 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||| | || ||||| ||||||| |
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|
| T |
15625765 |
tttccaacttctgcagcatcaaatattacctgagaaggttcatttatgattttatttaactccacctttgatgagtagtgtttttcaagaatggtggtcc |
15625864 |
T |
|
| Q |
213 |
aaagaaatttaacgaattgtaaaac |
237 |
Q |
| |
|
||||||||||||| ||||| ||||| |
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|
| T |
15625865 |
aaagaaatttaactaattggaaaac |
15625889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15605716 - 15605953
Alignment:
| Q |
1 |
gaagatactagcatgccgatgcaaaacagctatgtgtaatattgtttgattttcgccatccacctcccatatcaagcttggatgagcactaataagctcc |
100 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||||||| ||| |||||| || |||||| |||||||||||||| |||| | |||| |||||||| |
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|
| T |
15605716 |
gaagatactataatgccgattcaagacagctatgtgtaatatagttcgatttttgcaatccacatcccatatcaagctaggataaacactgataagctct |
15605815 |
T |
|
| Q |
101 |
gataaaaacccaaaatttccaacttcagcagcatcaaatattagttgagaaggttcatttatgatttcatttgactcctttgatgagtagtgtctgtcta |
200 |
Q |
| |
|
||||| || ||| ||||||||||||| ||||||||||| || ||||||||||||| ||||||||||| || | |||||| || | ||||||| ||| | |
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|
| T |
15605816 |
gataagaatccataatttccaacttctgcagcatcaaaaatcagttgagaaggttgatttatgattttatgtaactcctctggagggtagtgttggtcca |
15605915 |
T |
|
| Q |
201 |
gaatcgtggtccaaagaaatttaacgaattgtaaaacc |
238 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
15605916 |
aaatcgttgtccaaagaaatttaaccaattggaaaacc |
15605953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 38816887 - 38816932
Alignment:
| Q |
226 |
gaattgtaaaacccaactatttttaacctgcagcgactctctgttg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38816887 |
gaattgtaaaacccaactatttttaacctgcagcgactctctgttg |
38816932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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