View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15884_high_4 (Length: 406)
Name: NF15884_high_4
Description: NF15884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15884_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 35 - 392
Target Start/End: Original strand, 33790832 - 33791189
Alignment:
| Q |
35 |
atttttaggaagctgcatatttatcttactctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttaatttcaggggtg |
134 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33790832 |
atttttaggcagctgcatatttatcttactctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcaggggtg |
33790931 |
T |
|
| Q |
135 |
tgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33790932 |
tgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatc |
33791031 |
T |
|
| Q |
235 |
gaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagtaggtggaccaagtt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
33791032 |
aaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagtt |
33791131 |
T |
|
| Q |
335 |
acaatgttcctacaggaagacgtgatggattagtatcaactgttgatgatgtccatct |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
33791132 |
acaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtacatct |
33791189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
252 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagtaggtggaccaagttacaatgttcctacagga |
351 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || | || ||||||||| | || | |||| || ||||||| |||||| ||||||||||| |
|
|
| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
|
| Q |
352 |
agacgtgatggatta |
366 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University