View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15884_high_6 (Length: 364)

Name: NF15884_high_6
Description: NF15884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15884_high_6
NF15884_high_6
[»] chr8 (10 HSPs)
chr8 (22-336)||(1962905-1963219)
chr8 (22-336)||(2015210-2015524)
chr8 (22-336)||(2018593-2018907)
chr8 (37-179)||(2432951-2433093)
chr8 (22-335)||(2008196-2008509)
chr8 (38-335)||(2011827-2012124)
chr8 (49-158)||(2004843-2004952)
chr8 (22-318)||(1968523-1968819)
chr8 (54-158)||(1964747-1964851)
chr8 (195-335)||(2004989-2005129)
[»] chr1 (1 HSPs)
chr1 (44-336)||(5902084-5902376)
[»] chr3 (1 HSPs)
chr3 (274-335)||(18189870-18189931)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 1963219 - 1962905
Alignment:
Q  22 catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1963219 catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggaccctt 1963120  T
Q  122 ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga 221  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1963119 ttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga 1963020  T
Q  222 gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1963019 gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact 1962920  T
Q  322 tgagcaaatggaagt 336  Q
    |||||||||||||||    
T  1962919 tgagcaaatggaagt 1962905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 336
Target Start/End: Original strand, 2015210 - 2015524
Alignment:
Q  22 catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  2015210 catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgtt 2015309  T
Q  122 ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga 221  Q
    ||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| ||||||||||||    
T  2015310 ttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatctatcttga 2015409  T
Q  222 gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact 321  Q
    ||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||    
T  2015410 gctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaact 2015509  T
Q  322 tgagcaaatggaagt 336  Q
    ||||||||| |||||    
T  2015510 tgagcaaatagaagt 2015524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 336
Target Start/End: Original strand, 2018593 - 2018907
Alignment:
Q  22 catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt 121  Q
    |||||||||| ||| | ||| | ||||||||||| |||||||||||||| |||  | ||||  ||||||  || ||||| | ||||||||||||||| ||    
T  2018593 catcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggaccttt 2018692  T
Q  122 ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga 221  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| ||  || ||||| |||||||||||||||||||||||||||    
T  2018693 ttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttga 2018792  T
Q  222 gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact 321  Q
    ||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| |||||    
T  2018793 gcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaact 2018892  T
Q  322 tgagcaaatggaagt 336  Q
    ||||||||| |||||    
T  2018893 tgagcaaatagaagt 2018907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 2433093 - 2432951
Alignment:
Q  37 ttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaa 136  Q
    |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| ||||||| ||||| |||||||||| |||| ||||| | |||    
T  2433093 ttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaa 2432994  T
Q  137 gctattaattagaacaccatcaaaaagacggaatttttcaaca 179  Q
    ||||||||  ||||||||||||| || |||| |||||| ||||    
T  2432993 gctattaacaagaacaccatcaacaaaacggtattttttaaca 2432951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 2008196 - 2008509
Alignment:
Q  22 catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt 121  Q
    |||||||||||||| |||||  ||||| |||||| |||||||||| ||||||  || |||| |||| ||| || ||| |||||||   || ||||||| |    
T  2008196 catcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccat 2008295  T
Q  122 ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga 221  Q
     || ||||| |||||||||||||  ||||||||||||  |  ||  ||   || |||| || |||| |||   ||||||| |||||||||||||||||||    
T  2008296 ctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttga 2008395  T
Q  222 gctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac 320  Q
    |||| | |||||||| ||||  ||||| |  || ||||||||||||||||  ||||||||| | | |||||| ||||||||||| ||||||| ||||| |    
T  2008396 gctatgctcaagaaa-tccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagc 2008494  T
Q  321 ttgagcaaatggaag 335  Q
    ||  |||||| ||||    
T  2008495 ttaggcaaatagaag 2008509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 335
Target Start/End: Original strand, 2011827 - 2012124
Alignment:
Q  38 tgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaag 137  Q
    ||||| ||| ||||| ||||||||||||| ||| |||  | ||||  |||||||||| ||||||| ||| | |||||| ||| |||| ||||| | ||||    
T  2011827 tgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccatttccatttctaagaag 2011926  T
Q  138 ctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagcta-ggtcaagaaaa 236  Q
    |||||||  ||||||||||||  || ||  ||  ||| ||||  ||| || ||| | ||||||| ||||||||||||||||||| ||| ||||||| | |    
T  2011927 ctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatcttgaactatggtcaag-aga 2012025  T
Q  237 tcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag 335  Q
    ||||  ||||| |  || || || || |||| ||  ||||||||||| |||||||||||||||||||  ||||||| |||||||||  |||||| ||||    
T  2012026 tccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatccaacttaggcaaatagaag 2012124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 2004843 - 2004952
Alignment:
Q  49 ggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattag 148  Q
    |||| ||||||||||||| ||||||| || |||||||||||||||| ||| |||||||   |||||||||| | || ||||| |||||||||||||  ||    
T  2004843 ggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaag 2004942  T
Q  149 aacaccatca 158  Q
    ||||||||||    
T  2004943 aacaccatca 2004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 318
Target Start/End: Complemental strand, 1968819 - 1968523
Alignment:
Q  22 catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt 121  Q
    |||||||||| ||  |||||  |||||||||||| |||||||||| ||||||  || |||| |||||||| || ||| |||||||   |||||| ||| |    
T  1968819 catcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtcccat 1968720  T
Q  122 ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga 221  Q
     || | |||||||||||||||||  | ||||||||||  || ||  ||   || || |  | |||| |||   ||||||  |||||||||||||||||||    
T  1968719 ctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttga 1968620  T
Q  222 gctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca 318  Q
    |||| | |||||| | ||||  ||||| || || ||||| ||||||||||  ||||||||||| | |||||| ||||||||||| ||||||| |||||    
T  1968619 gctacgctcaagaga-tccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca 1968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 1964851 - 1964747
Alignment:
Q  54 atgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacac 153  Q
    ||||||||||||| |||||||  | ||||  |||||||||| ||||||  ||||| |||||| ||| |||| ||||| | |||||||||||  |||||||    
T  1964851 atgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacac 1964752  T
Q  154 catca 158  Q
    |||||    
T  1964751 catca 1964747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
Q  195 ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg 293  Q
    ||||||| ||||||||| |||||||||| | || ||| || | ||||  ||||| || || ||||||||||||||||  |||||| |||| | |||||      
T  2004989 ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca 2005087  T
Q  294 tactcacatgaagtttccttatccaacttgagcaaatggaag 335  Q
    ||||||||||| ||||| | |||||||||  |||||| ||||    
T  2005088 tactcacatgatgtttcttcatccaacttaggcaaatagaag 2005129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 44 - 336
Target Start/End: Complemental strand, 5902376 - 5902084
Alignment:
Q  44 tgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctatta 143  Q
    |||||||||||||||||||| ||  ||||||  | ||||  |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  5902376 tgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctttttcaatttccaggaagctatta 5902277  T
Q  144 attagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgac 243  Q
    || || |  ||||||| |  || |||| ||| || || |||||| ||||| ||||||||||| || ||||||||||||||| || |||  | ||||||||    
T  5902276 ataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttgagcttgggcaacgagatcccgac 5902177  T
Q  244 catgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagt 336  Q
    || |||| || ||||||||||||  ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||    
T  5902176 cacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaatttgagcaaatagaagt 5902084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 335
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
Q  274 taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag 335  Q
    |||||||||| |||| ||||||||||||||  ||||||| |||||||||  |||||| ||||    
T  18189931 taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag 18189870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University