View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15884_low_1 (Length: 313)
Name: NF15884_low_1
Description: NF15884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15884_low_1 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 128 - 313
Target Start/End: Original strand, 9537668 - 9537854
Alignment:
| Q |
128 |
tttgagataattttagagactaaacattgactgacccaatagaactaatgtcatcaaagtttttcaatttcatatattattttataaattt-gtaaaatt |
226 |
Q |
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| T |
9537668 |
tttgagataattttagagactaaacattgactgacccaatagaactaatgtaatcaaagtttttcaatttcatatattattttataaattttgtaaaatt |
9537767 |
T |
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| Q |
227 |
gagaaaacaaattaatcaaattctttaattttagggactaaattagtatattgatcaaccaaaaatattgtaatagagcaatttttt |
313 |
Q |
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| T |
9537768 |
tagaaaacaaattaatcaaattctttaattttaggggctaaattagtatattgatcaaccaaaaatattgtaatagagcaatttttt |
9537854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9537541 - 9537592
Alignment:
| Q |
1 |
tggtgaacaacatgtgagagttgtaaagtttgaggtatatatagagtctgat |
52 |
Q |
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| T |
9537541 |
tggtgaacaacatgtgagagttgtaaagtttgaggtatatatagagtctgat |
9537592 |
T |
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