View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15885_high_12 (Length: 350)
Name: NF15885_high_12
Description: NF15885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15885_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 337
Target Start/End: Original strand, 3399241 - 3399578
Alignment:
| Q |
3 |
agttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagtat |
102 |
Q |
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| T |
3399241 |
agttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagtat |
3399340 |
T |
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| Q |
103 |
atgttccctgcatgtgaagtnnnnnnngctgagaaaagttagagaaaatgttcttcattttccttgcttgctagaaagctaggtagcatcgacacttcat |
202 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3399341 |
atgttccctgcatgtgaagtaaaaaaagctgagaaaagttagagaaaatgttcttcattttccttgcttgctagaaagctaggtagcatcgacacttcat |
3399440 |
T |
|
| Q |
203 |
attgagggtgtgttttgcatccgacacaagctggtgctagacaatatacatacacatgtgattttattcaatcatttgnnnnnnnctcaat---ttatta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
3399441 |
attgagggtgtgttttgcatccgacacaagctggtgctagacaatatacatacacatgtgattttattcaatcatttgtttttttctcaatttattatta |
3399540 |
T |
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| Q |
300 |
ctattgtcgacgtcttactgtaaaatatcgtgtctgtg |
337 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
3399541 |
ctattgtcgacgtcttactgtaaaatatcgtgtttgtg |
3399578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 3 - 275
Target Start/End: Complemental strand, 31175313 - 31175045
Alignment:
| Q |
3 |
agttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagtat |
102 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
31175313 |
agttttaaaagcctcagcttttgcatctcctggaaagaattagtaccaaatataatcctgcctgttctttggcacttcaaaatcattccctcaatagtat |
31175214 |
T |
|
| Q |
103 |
atgttccctgcatgtgaagtnnnnnnngctgagaaaagttagagaaaatgttcttcattttccttgcttgctagaaagctaggtagcatcgacacttcat |
202 |
Q |
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||||||||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175213 |
ctgttccctgcatgtgaagtaaaaaaagctgagaaaagtaagggaaaatgtttttcattttccttgcttgctagaaagctaggtagcatcgacacttcat |
31175114 |
T |
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| Q |
203 |
attgagggtgtgttttgcatccgacacaagctggtgctagacaatatacatacacatgtgattttattcaatc |
275 |
Q |
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||||||| || |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
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| T |
31175113 |
attgaggacgtattttgcatccgacacaagttggtgccagacaat----atacacatgtgattttattcaatc |
31175045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 8372389 - 8372508
Alignment:
| Q |
3 |
agttttaaaagtctcagcttttgcatctcctgcaaagaatcagtaccaaatataattctgcctgttctttggtacttcaaaatcattcccacaatagtat |
102 |
Q |
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||||||||||| ||||| |||| ||||||||| |||| || ||| ||||| |||||||||||||||||| |||||||||||| ||| ||| ||| | |
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| T |
8372389 |
agttttaaaagcctcagtttttccatctcctggaaagcattagtgccaaagcaaattctgcctgttctttgccacttcaaaatcaaaccctcaacagttt |
8372488 |
T |
|
| Q |
103 |
atgttccctgcatgtgaagt |
122 |
Q |
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|||||||| |||| ||||| |
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| T |
8372489 |
ttgttccctacatgagaagt |
8372508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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